Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical
           protein F36D1.3 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 375 IFYMNKTVDTFYKENSFLIFKNLLSFNMQFTVIL 476
           IF  N+ +  FY +N   I +  + F++  TVIL
Sbjct: 126 IFCANRAIIVFYPKNHNEICRRFMKFSLPITVIL 159


>AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical
           protein Y45F10B.6 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
 Frame = +1

Query: 229 KYISIQLFKHLTNFLYTHIFIFSFKAQSQLXXXXXXXXXXXXSQFF--FCKYFT*TKL*I 402
           K +S ++ K+   F+Y + FIFSF     L               +  F   +   K+ +
Sbjct: 146 KSLSARISKYAIPFIYVYPFIFSFSLAPALGFCRQLLGPYQFGAIYIWFSGNWMEIKIVV 205

Query: 403 HFIRKIHS*YLRIYYLLICNLL-LF*WKRIK 492
            F+  +      I++L++C LL LF ++++K
Sbjct: 206 GFVLNM------IFWLILCTLLNLFLYRKLK 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,600,427
Number of Sequences: 27780
Number of extensions: 164003
Number of successful extensions: 328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)