Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27870.1 68417.m04001 integral membrane family protein contai...    30   0.82 
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ...    29   2.5  
At4g13510.1 68417.m02107 ammonium transporter 1, member 1 (AMT1....    28   4.4  
At4g13000.1 68417.m02029 protein kinase family protein contains ...    27   7.7  
At3g16350.1 68416.m02068 myb family transcription factor ; conta...    27   7.7  

>At4g27870.1 68417.m04001 integral membrane family protein contains
           Pfam PF01988: Integral membrane protein
          Length = 761

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 9   GTRENFTINAQIFFVTFILTLSSPPDTPQCEFS 107
           G RENFT++A +  ++FI+T   PP      FS
Sbjct: 629 GRRENFTLHATVAILSFIITGILPPVVYYFSFS 661


>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 711

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 8   RHEGKFYYKCSNLFCDFHID 67
           RH   F Y C+  FCDF +D
Sbjct: 495 RHSTGFVYSCNVEFCDFQVD 514


>At4g13510.1 68417.m02107 ammonium transporter 1, member 1 (AMT1.1)
           identical to SP|P54144 High affinity ammonium
           transporter (AtAMT1;1) {Arabidopsis thaliana}
          Length = 501

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 387 NKTVDT-FYKENSFLIFKNLLSFNMQFTVILMETNQVRS 500
           NK +DT F  +N++L+F   L F+MQ    ++    VR+
Sbjct: 32  NKFIDTAFAIDNTYLLFSAYLVFSMQLGFAMLCAGSVRA 70


>At4g13000.1 68417.m02029 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 372

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 33  NAQIFFVTFILTLSSPPDTPQCEFSFETR 119
           N  +  V F L+ + PP TPQ  FS   R
Sbjct: 157 NGHLMLVDFDLSTNLPPRTPQSSFSSSPR 185


>At3g16350.1 68416.m02068 myb family transcription factor ; contains
           Pfam profile: PF00249 Myb-like DNA-binding domain
          Length = 387

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 76  VRLTHRNVNSALRHEVQTSTAR*KLNYEPTKP 171
           V ++  ++  A RHE +TS +   L  EP++P
Sbjct: 332 VGMSQLSIGMATRHETETSPSPLSLRLEPSRP 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,600,711
Number of Sequences: 28952
Number of extensions: 137415
Number of successful extensions: 268
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)