Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A04f
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    25   6.4  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   8.4  

>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 378 IQYWYLVQCFVSILLSGLW 322
           I+Y  ++ C V+ILLS LW
Sbjct: 86  IRYSLILTCLVAILLSVLW 104


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 372 IVYTFFCFSTYNEFH 416
           I+ TFFC S Y+ +H
Sbjct: 203 IISTFFCLSRYHVYH 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,685
Number of Sequences: 5004
Number of extensions: 34246
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)