Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A04f
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631...    29   1.6  
06_03_0988 + 26642247-26642506,26642790-26642872,26643150-266432...    28   4.8  
07_03_0476 - 18547223-18548187,18548743-18549958                       27   8.5  

>01_06_0649 +
           30861946-30862179,30862702-30862824,30863104-30863197,
           30863819-30863901,30863984-30864073,30864176-30864562,
           30864903-30864991,30867801-30867907,30868431-30868822
          Length = 532

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 180 HHVDDYVELLYDDIPEKIKGSALILQLA 263
           H VD+ V  L + +P++IK SA  LQLA
Sbjct: 373 HLVDNRVVFLLESVPDEIKDSARSLQLA 400


>06_03_0988 +
           26642247-26642506,26642790-26642872,26643150-26643238,
           26643478-26643551,26643783-26643833,26644512-26644588,
           26644694-26645313
          Length = 417

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 219 YHHIIILHNHQHGAKQQQDHFP 154
           Y  ++ LH H H  +QQQ  FP
Sbjct: 285 YWSLLALHYHHHQQQQQQQQFP 306


>07_03_0476 - 18547223-18548187,18548743-18549958
          Length = 726

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 132 SRETMSPVESGPVAVLHHVDDYVELLYDDIPEKIKGSA 245
           S E  S +ES    +L H+DD ++  Y DI   +  S+
Sbjct: 650 SEEATSYIESQSSVLLKHLDDILQTGYPDIGNHVVASS 687


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,981,334
Number of Sequences: 37544
Number of extensions: 179124
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)