Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A04f
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   2e-10
SB_55425| Best HMM Match : CBM_14 (HMM E-Value=7.2)                    29   2.8  
SB_57570| Best HMM Match : CBM_14 (HMM E-Value=7.2)                    29   2.8  

>SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 850

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 23/37 (62%), Positives = 33/37 (89%)
 Frame = +3

Query: 327 VLREEWKRSIELSTNIVYTFFCFSTYNEFHPVIIQYK 437
           V+RE+W++S EL+TNIVY FFCFS++++FH +II YK
Sbjct: 122 VMREDWRKSSELTTNIVYMFFCFSSFSQFHTIIIHYK 158


>SB_55425| Best HMM Match : CBM_14 (HMM E-Value=7.2)
          Length = 138

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 408 HCRLRNKKMCIQYWYLVQCFVSIL 337
           HCRLR   +C+Q  +LV   VS L
Sbjct: 95  HCRLRGSSICLQGLFLVALAVSAL 118


>SB_57570| Best HMM Match : CBM_14 (HMM E-Value=7.2)
          Length = 82

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 408 HCRLRNKKMCIQYWYLVQCFVSIL 337
           HCRLR   +C+Q  +LV   VS L
Sbjct: 39  HCRLRGSSICLQGLFLVALAVSAL 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,352,174
Number of Sequences: 59808
Number of extensions: 225625
Number of successful extensions: 467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)