Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A04f
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associa...    68   3e-12
AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.        68   3e-12
U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associa...    48   5e-06
AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin assoc...    48   5e-06
Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical ...    27   7.6  

>U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform a protein.
          Length = 696

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
 Frame = +3

Query: 150 PVESGPV-AVLHHVDDYVELLYDDIP-EKIKGSALILQLARNPDXXXXXXXXXXXXXXXX 323
           P+ S  + A L  +D+Y+E  Y +   EK KG+  + +L++NP                 
Sbjct: 99  PIHSPTISAELGKIDEYIECFYGETSVEKNKGAVALYELSKNPQNLTQLVNNETLMMALA 158

Query: 324 XVLREEWKRSIELSTNIVYTFFCFSTYNEFHPVIIQYKIGSLCMDVIDYK 473
            V RE+WK+  E+ TNI+  F   S ++  H +++ +KIG+LC++ ++++
Sbjct: 159 RVFREDWKKHFEVGTNIMNLFVNISKFSCLHGILLHHKIGTLCVNAMEHE 208


>AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.
          Length = 696

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
 Frame = +3

Query: 150 PVESGPV-AVLHHVDDYVELLYDDIP-EKIKGSALILQLARNPDXXXXXXXXXXXXXXXX 323
           P+ S  + A L  +D+Y+E  Y +   EK KG+  + +L++NP                 
Sbjct: 99  PIHSPTISAELGKIDEYIECFYGETSVEKNKGAVALYELSKNPQNLTQLVNNETLMMALA 158

Query: 324 XVLREEWKRSIELSTNIVYTFFCFSTYNEFHPVIIQYKIGSLCMDVIDYK 473
            V RE+WK+  E+ TNI+  F   S ++  H +++ +KIG+LC++ ++++
Sbjct: 159 RVFREDWKKHFEVGTNIMNLFVNISKFSCLHGILLHHKIGTLCVNAMEHE 208


>U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform b protein.
          Length = 679

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = +3

Query: 150 PVESGPV-AVLHHVDDYVELLYDDIP-EKIKGSALILQLARNPDXXXXXXXXXXXXXXXX 323
           P+ S  + A L  +D+Y+E  Y +   EK KG+  + +L++NP                 
Sbjct: 99  PIHSPTISAELGKIDEYIECFYGETSVEKNKGAVALYELSKNPQNLTQLVNNETLMMALA 158

Query: 324 XVLREEWKRSIELSTNIVYTF 386
            V RE+WK+  E+ TNI+  F
Sbjct: 159 RVFREDWKKHFEVGTNIMNLF 179


>AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin
           associated protein kap-1 protein.
          Length = 679

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = +3

Query: 150 PVESGPV-AVLHHVDDYVELLYDDIP-EKIKGSALILQLARNPDXXXXXXXXXXXXXXXX 323
           P+ S  + A L  +D+Y+E  Y +   EK KG+  + +L++NP                 
Sbjct: 99  PIHSPTISAELGKIDEYIECFYGETSVEKNKGAVALYELSKNPQNLTQLVNNETLMMALA 158

Query: 324 XVLREEWKRSIELSTNIVYTF 386
            V RE+WK+  E+ TNI+  F
Sbjct: 159 RVFREDWKKHFEVGTNIMNLF 179


>Z81479-9|CAE17735.1|  215|Caenorhabditis elegans Hypothetical
           protein C34F6.11 protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 375 VYTFFCFSTYNEFHPVIIQYKIGSLC 452
           ++TFFC+S Y  F   ++ +  G LC
Sbjct: 56  IWTFFCYSVYINFIFALLAFVGGVLC 81


>AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical
           protein ZC581.9 protein.
          Length = 827

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 366 TNIVYTFFCFSTYNEFHPVIIQYK 437
           ++IV+ F C S  N  HPVI+  K
Sbjct: 543 SSIVHLFGCISLCNSSHPVIVHAK 566


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,326,573
Number of Sequences: 27780
Number of extensions: 185149
Number of successful extensions: 432
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)