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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A04f
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containi...    34   0.062
At5g49780.1 68418.m06165 leucine-rich repeat transmembrane prote...    28   4.1  
At3g20480.1 68416.m02594 tetraacyldisaccharide 4'-kinase family ...    28   4.1  
At4g34131.1 68417.m04841 UDP-glucoronosyl/UDP-glucosyl transfera...    27   5.4  
At4g21340.1 68417.m03083 ethylene-responsive protein-related con...    27   9.4  
At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, put...    27   9.4  

>At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 33.9 bits (74), Expect = 0.062
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
 Frame = +3

Query: 114 SENLKVSRETMSPV-----ESGPVAVLHHVDDYVELLYDDIPEKIKGSALILQLARN 269
           +EN+K++ E +S V     ESG ++    + DYV  LYD +P+ I  ++L+  L ++
Sbjct: 127 NENVKLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVPDVIACNSLLSLLVKS 183


>At5g49780.1 68418.m06165 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1006

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
 Frame = +3

Query: 192 DYVELLYDDIPEKI-----KGSALILQLARNP 272
           D+V+L Y+DI E I     KGS+ I+ LA NP
Sbjct: 416 DFVDLQYNDITEYIKQPANKGSSRIVILANNP 447


>At3g20480.1 68416.m02594 tetraacyldisaccharide 4'-kinase family
           protein contains Pfam PF02606: tetraacyldisaccharide-1-P
           4'-kinase
          Length = 395

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 135 RETMSPVESGPVAVLHHVDDYVELLYDDIPEKIKG 239
           RE +  +E   VAV+HHVD   +    DI   I+G
Sbjct: 206 REPLLALERADVAVVHHVDLITKQSLRDIENMIQG 240


>At4g34131.1 68417.m04841 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 481

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 176 NSNRTTFHGTHCFSRHFEIF*RLGNPKNILS 84
           N  R  FHGT  FS   E   R+ NP+NI++
Sbjct: 146 NVPRLVFHGTGYFSLCSEYCIRVHNPQNIVA 176


>At4g21340.1 68417.m03083 ethylene-responsive protein-related
           contains similarity to ethylene-inducible ER33 protein
           [Lycopersicon esculentum] gi|5669656|gb|AAD46413
          Length = 301

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 117 ENLKVSRETMSPV-ESGPVAVLHHVDDYVELLYDDIPEKIKGS 242
           + +   ++ +SP  ++   +VLH   DY++ L + I EK+  S
Sbjct: 198 DRITALQQLVSPFGKTDTASVLHDAIDYIKFLQEQITEKVSTS 240


>At1g51850.1 68414.m05845 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 865

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 201 ELLYDDIPEKIKGSALILQLAR 266
           E +YD IPE+  G A +LQ+ +
Sbjct: 287 ETIYDKIPEQCDGGACLLQVVK 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,477,483
Number of Sequences: 28952
Number of extensions: 164172
Number of successful extensions: 395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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