BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS308A04f (501 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containi... 34 0.062 At5g49780.1 68418.m06165 leucine-rich repeat transmembrane prote... 28 4.1 At3g20480.1 68416.m02594 tetraacyldisaccharide 4'-kinase family ... 28 4.1 At4g34131.1 68417.m04841 UDP-glucoronosyl/UDP-glucosyl transfera... 27 5.4 At4g21340.1 68417.m03083 ethylene-responsive protein-related con... 27 9.4 At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, put... 27 9.4 >At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 819 Score = 33.9 bits (74), Expect = 0.062 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%) Frame = +3 Query: 114 SENLKVSRETMSPV-----ESGPVAVLHHVDDYVELLYDDIPEKIKGSALILQLARN 269 +EN+K++ E +S V ESG ++ + DYV LYD +P+ I ++L+ L ++ Sbjct: 127 NENVKLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVPDVIACNSLLSLLVKS 183 >At5g49780.1 68418.m06165 leucine-rich repeat transmembrane protein kinase, putative Length = 1006 Score = 27.9 bits (59), Expect = 4.1 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 5/32 (15%) Frame = +3 Query: 192 DYVELLYDDIPEKI-----KGSALILQLARNP 272 D+V+L Y+DI E I KGS+ I+ LA NP Sbjct: 416 DFVDLQYNDITEYIKQPANKGSSRIVILANNP 447 >At3g20480.1 68416.m02594 tetraacyldisaccharide 4'-kinase family protein contains Pfam PF02606: tetraacyldisaccharide-1-P 4'-kinase Length = 395 Score = 27.9 bits (59), Expect = 4.1 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +3 Query: 135 RETMSPVESGPVAVLHHVDDYVELLYDDIPEKIKG 239 RE + +E VAV+HHVD + DI I+G Sbjct: 206 REPLLALERADVAVVHHVDLITKQSLRDIENMIQG 240 >At4g34131.1 68417.m04841 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 481 Score = 27.5 bits (58), Expect = 5.4 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -2 Query: 176 NSNRTTFHGTHCFSRHFEIF*RLGNPKNILS 84 N R FHGT FS E R+ NP+NI++ Sbjct: 146 NVPRLVFHGTGYFSLCSEYCIRVHNPQNIVA 176 >At4g21340.1 68417.m03083 ethylene-responsive protein-related contains similarity to ethylene-inducible ER33 protein [Lycopersicon esculentum] gi|5669656|gb|AAD46413 Length = 301 Score = 26.6 bits (56), Expect = 9.4 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +3 Query: 117 ENLKVSRETMSPV-ESGPVAVLHHVDDYVELLYDDIPEKIKGS 242 + + ++ +SP ++ +VLH DY++ L + I EK+ S Sbjct: 198 DRITALQQLVSPFGKTDTASVLHDAIDYIKFLQEQITEKVSTS 240 >At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, putative similar to light repressible receptor protein kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376 Length = 865 Score = 26.6 bits (56), Expect = 9.4 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +3 Query: 201 ELLYDDIPEKIKGSALILQLAR 266 E +YD IPE+ G A +LQ+ + Sbjct: 287 ETIYDKIPEQCDGGACLLQVVK 308 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,477,483 Number of Sequences: 28952 Number of extensions: 164172 Number of successful extensions: 395 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 393 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 395 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 888318720 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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