Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A03f
         (509 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    45   0.001
UniRef50_A3M5T6 Cluster: Putative uncharacterized protein; n=1; ...    32   6.6  
UniRef50_A7BG18 Cluster: Merozoite surface protein-1; n=16; Plas...    32   8.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +3

Query: 63  RWVDELTAHLMLSGYWSPQ 119
           RWVDELTAHL+LSGYWSP+
Sbjct: 158 RWVDELTAHLVLSGYWSPR 176


>UniRef50_A3M5T6 Cluster: Putative uncharacterized protein; n=1;
           Acinetobacter baumannii ATCC 17978|Rep: Putative
           uncharacterized protein - Acinetobacter baumannii
           (strain ATCC 17978 / NCDC KC 755)
          Length = 345

 Score = 32.3 bits (70), Expect = 6.6
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 203 HPSNRNALVLHG-RNNFQRTVELIVRKIIIVRNKTDREENAHRNSLKTLSPRIKYIPSLF 379
           H S R  L  +  R N+Q   EL ++   +V++K D +ENA   +L       KY PSL 
Sbjct: 155 HVSGREDLKNYALRLNYQPLPELQIKTEFVVQDKKDGQENAGYLALNYNFLSSKYTPSLG 214

Query: 380 FLF 388
           + F
Sbjct: 215 YRF 217


>UniRef50_A7BG18 Cluster: Merozoite surface protein-1; n=16;
           Plasmodium inui|Rep: Merozoite surface protein-1 -
           Plasmodium inui
          Length = 1915

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +2

Query: 212 NRNALVLHGRNNFQRTVELIVRKIIIVRNKTDREENAHRNSLKTLSPRIKYIPSLF 379
           N N LVL  + +F   VEL V+K++I++ K +  +N   +  K       Y+P ++
Sbjct: 605 NENKLVLENKFDFSGVVELQVQKVLIIK-KIEALKNIQNHLKKAKLKDDLYVPKVY 659


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,640,736
Number of Sequences: 1657284
Number of extensions: 8554307
Number of successful extensions: 16308
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16305
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)