Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A03f
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   3.8  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   6.6  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   6.6  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   8.7  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    25   8.7  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   8.7  

>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 278 KIIIVRNKTDREENAHRNSLKTLSPRIKYIPSL 376
           +I ++RNK  +EE+ H ++ + L    KY+ S+
Sbjct: 395 EIDMLRNKLLKEEHKHHSTSEKLEELSKYVASI 427


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 218 NALVLHGRNNFQRTVELIVRKIIIVRNKTDREENAHRNSLKTLSPRIKYIPSLF 379
           + LVLH      RTV  +  KI+ V NK  R    H  S K    RI ++  LF
Sbjct: 515 STLVLH----LGRTVTSVSLKIVTVNNKRSR----HIASRKRALVRISFLDGLF 560


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -1

Query: 224 MRFGLKGGAAVSRCNYT*DLRTYISRWVAYLRCRCLWTPVTT*HQVGCELVHPSKQLKKN 45
           M FG+   AAV+   +        S  VA LR R  W+      ++G  L  P   ++  
Sbjct: 410 MYFGIAMRAAVANGMHKKSANAQFSGDVAELRKRLFWSVYCMERKIGISLGRPESLVRSE 469

Query: 44  V 42
           +
Sbjct: 470 I 470


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 269 IVRKIIIVRNKTDREENAHRNSLKTLSPRIKYIPS 373
           +V  + +V+  TD ++N   ++ + L   IKY+PS
Sbjct: 51  LVALLTLVKEFTDLKKNFKGHTFQLLELVIKYVPS 85


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 239 RNNFQRTVEL----IVRKIIIVRNKTDREENAHRNSLKTLSPR 355
           R++FQR   +    I R    + NK  RE +   NSL+ L+P+
Sbjct: 367 RSDFQRVTHIVEQAIARSSSEIVNKDTRECSIVMNSLRVLAPK 409


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 411 CIYIXPTLNKKKREGMYLIRGDNVFREFRCAFSS 310
           C Y+ P L   K  G  +++  N     +C FS+
Sbjct: 454 CPYLKPKLVISKSFGTLIVKNHNQLSLLKCTFSN 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,785
Number of Sequences: 5004
Number of extensions: 37150
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)