Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A03f
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.42 
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_9187| Best HMM Match : E-MAP-115 (HMM E-Value=1.6)                  27   6.8  
SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)                      27   9.0  
SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 278 YVQLVPQFFENYFCREALMRFG 213
           Y  L+P  FENYFC  A+  FG
Sbjct: 131 YQDLIPSEFENYFCYAAMWAFG 152


>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 152 RYKFLGLKYSYNG*RLPHPSNRNA 223
           RY+FL  KY YN  +  HP ++ +
Sbjct: 469 RYEFLAAKYGYNYKQFNHPEHKRS 492


>SB_9187| Best HMM Match : E-MAP-115 (HMM E-Value=1.6)
          Length = 198

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 308 REENAHRNSLKTLSPRIKY 364
           RE+NA  NSLKT   R+KY
Sbjct: 18  REQNAELNSLKTELARVKY 36


>SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)
          Length = 491

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/27 (37%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -3

Query: 381 KKREGMYL-IRGDNVFREFRCAFSSRS 304
           +K +G+ + ++ D++++EF C +SSRS
Sbjct: 268 RKDQGLNVPVKQDSIYKEFFCLYSSRS 294


>SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 876

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 310 SVSFISNDNYFTYN*FHSSLKIIS 239
           S + + NDN+FT++ FH    +IS
Sbjct: 542 STAAVPNDNWFTFSSFHGDQVVIS 565


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,490,654
Number of Sequences: 59808
Number of extensions: 271660
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)