Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A03f
         (509 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.      24   2.6  
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.        23   4.5  
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    23   4.5  

>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 179 SYNG*RLPHPSNRNALVLHGRNNFQRTVELIVRKI 283
           S  G + PH      + L     +Q++ EL++RK+
Sbjct: 32  STGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 66


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 188 G*RLPHPSNRNALVLHGRNNFQRTVELIVRKI 283
           G + PH      + L     +Q++ EL++RK+
Sbjct: 33  GVKKPHRYRPGTVALREIRRYQKSTELLIRKL 64


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 328  SMRVFFSVSFISNDNYFTYN*FHSSLKII 242
            SMR +F  S ++ND+Y  ++  H  + +I
Sbjct: 1586 SMRGYFDFSVLANDSYGCHDRAHVFIYLI 1614


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,207
Number of Sequences: 2352
Number of extensions: 8799
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46091631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)