Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A03f
         (509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy...    30   0.79 
At4g09110.1 68417.m01503 zinc finger (C3HC4-type RING finger) fa...    27   7.3  
At5g22340.1 68418.m02606 expressed protein                             27   9.7  
At3g19600.1 68416.m02485 NLI interacting factor (NIF) family pro...    27   9.7  

>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 544

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -1

Query: 251 ENYFCREALMRFGLKGGAAVSRCNYT*DLRTYISRWVAYLRCRCLWTPV 105
           ENY   +A++RF  + G AV   N   D   Y S+WV  L    L+  V
Sbjct: 239 ENYTVADAMLRFFNQHGIAVRGHNVVWDHPKYQSKWVTSLSRNDLYNAV 287


>At4g09110.1 68417.m01503 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 302

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 40  YTFFFNCLDGWTSSQPT 90
           +TF  NC+D W SSQ T
Sbjct: 144 HTFHANCIDVWLSSQST 160


>At5g22340.1 68418.m02606 expressed protein 
          Length = 323

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 197 LPHPSNRNALVLHGRNNFQRTVELIVRKIIIVRNKTDREEN 319
           L  P NRN+  L   N   R+V  +V + ++     DREEN
Sbjct: 30  LRRPPNRNSHRLAAINAASRSVSELVEEDVLQMFMKDREEN 70


>At3g19600.1 68416.m02485 NLI interacting factor (NIF) family
           protein low similarity to CTD phosphatase [Xenopus
           laevis] GI:13487713; contains Pfam profile PF03031: NLI
           interacting factor
          Length = 601

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 206 PSNRNALVLHGRNNFQRTVELIVRKIIIVRNKTDREENAHRNSLKTLSPRIKYIPSLFF 382
           P+N++ LVL GR N+ R+   +++       KTD  EN     L  +   +K I   FF
Sbjct: 226 PNNKSNLVLIGRYNYFRSQSRVLKP--HSEEKTDESEN--NGGLANVLKLLKGIHHKFF 280


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,110,755
Number of Sequences: 28952
Number of extensions: 190712
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)