Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A02f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.2  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   2.9  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   8.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 114 GRDHDRVHEDRRGLYLH 64
           G+D   VH  RRGL LH
Sbjct: 14  GQDKHMVHWFRRGLRLH 30


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 455 RQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNK 351
           ++  K NS +NGS D +      ++    + NG+K
Sbjct: 275 KEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 491 LVTPVTSSNW*NRQLSKDNSASNGSGD 411
           L+   T+S+   R  +  NSASN SGD
Sbjct: 330 LLRHYTASSKNYRSATGGNSASNSSGD 356


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 304 LYRNKHVPDSAHVSRHL 354
           L + K  PD A + RHL
Sbjct: 51  LEKGKCTPDGAELKRHL 67


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 200 VDFSFANKTAEFGDRN 153
           VDF F N +A F D N
Sbjct: 82  VDFLFDNFSAAFQDHN 97


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 200 VDFSFANKTAEFGDRN 153
           VDF F N +A F D N
Sbjct: 315 VDFLFDNFSAAFQDHN 330


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 200 VDFSFANKTAEFGDRN 153
           VDF F N +A F D N
Sbjct: 315 VDFLFDNFSAAFQDHN 330


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,029
Number of Sequences: 336
Number of extensions: 2388
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)