Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308A02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 218 4e-58
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.97
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 5.2
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 25 5.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.8
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 25 6.8
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 25 9.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 9.0
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 9.0
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 25 9.0
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 218 bits (533), Expect = 4e-58
Identities = 94/130 (72%), Positives = 118/130 (90%)
Frame = +3
Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 311
++++KEWVPVTKLGRLV+ GKI +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86
Query: 312 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 491
KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG
Sbjct: 87 KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146
Query: 492 IGKPHTVPCK 521
+G PHTVP K
Sbjct: 147 LGDPHTVPVK 156
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 129 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 4
++HDHG H + H DR + R R++R ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 458 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 324
+R LS + GSG L N+T+ +A+G T +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 135 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 257
+D+ EW P++ LV ++ E +++ K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 503 WLSDLVTPVTSSNW*NRQLSKDNSASN 423
++S++VTP T++NW N S +S S+
Sbjct: 192 YVSEVVTPTTTNNW-NSSSSFTSSTSS 217
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 241 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 351
+SR+ I S+ +++ S R KH+P+ ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +3
Query: 246 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG--HIGLGVKCSKEVA- 416
E F G + E + ++P G TRF V D NG I G+ + E A
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAAC 437
Query: 417 TAIRGAIILAKLSVLPV 467
++ G L S+L +
Sbjct: 438 VSVHGGNRLGANSLLDI 454
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 488 VTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFL 309
VTP +SS+ + ++ +A + A+ HT N +V C+ + C+FL
Sbjct: 255 VTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIGCVAFAVVMALCIFL 313
Query: 308 Y 306
Y
Sbjct: 314 Y 314
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +1
Query: 337 HVSRHLL-PLATTTVILV-WV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 510
+V HL P T L W + + + + F +L L +FE + SE H P
Sbjct: 613 YVESHLNGPTERTAASLTNWYSTLLKNTQIRFRKILRFSETLNSRFENASDFVISEGHLP 672
Query: 511 SL 516
L
Sbjct: 673 DL 674
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 422 GSGDFLAALHTQTNMTVVVANGNKCLETCA 333
G+GD H +T T +V +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,235
Number of Sequences: 5004
Number of extensions: 40822
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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