Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A02f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   258   2e-69
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   258   2e-69
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   258   2e-69
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   258   2e-69
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   258   2e-69
AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2 pr...    29   5.1  
AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon prot...    29   5.1  
AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB...    29   5.1  
AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA...    29   5.1  
AY071302-1|AAL48924.1|  302|Drosophila melanogaster RE33041p pro...    28   8.8  
AE014134-486|AAF51198.2|  302|Drosophila melanogaster CG2973-PA ...    28   8.8  
AE013599-325|AAF59274.2| 1307|Drosophila melanogaster CG11101-PA...    28   8.8  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  258 bits (633), Expect = 2e-69
 Identities = 122/130 (93%), Positives = 124/130 (95%)
 Frame = +3

Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 311
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 312 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 491
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 492 IGKPHTVPCK 521
           IGKPHTVPCK
Sbjct: 157 IGKPHTVPCK 166


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  258 bits (633), Expect = 2e-69
 Identities = 122/130 (93%), Positives = 124/130 (95%)
 Frame = +3

Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 311
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 312 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 491
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 492 IGKPHTVPCK 521
           IGKPHTVPCK
Sbjct: 157 IGKPHTVPCK 166


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  258 bits (633), Expect = 2e-69
 Identities = 122/130 (93%), Positives = 124/130 (95%)
 Frame = +3

Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 311
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 312 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 491
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 492 IGKPHTVPCK 521
           IGKPHTVPCK
Sbjct: 157 IGKPHTVPCK 166


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  258 bits (633), Expect = 2e-69
 Identities = 122/130 (93%), Positives = 124/130 (95%)
 Frame = +3

Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 311
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 312 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 491
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 492 IGKPHTVPCK 521
           IGKPHTVPCK
Sbjct: 157 IGKPHTVPCK 166


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  258 bits (633), Expect = 2e-69
 Identities = 122/130 (93%), Positives = 124/130 (95%)
 Frame = +3

Query: 132 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 311
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLPIKEFEIIDFFLG SL DEVLKIMPVQ
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQ 96

Query: 312 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 491
           KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK
Sbjct: 97  KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156

Query: 492 IGKPHTVPCK 521
           IGKPHTVPCK
Sbjct: 157 IGKPHTVPCK 166


>AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2
            protein.
          Length = 1711

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 406  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 510
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon protein.
          Length = 1695

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 406  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 510
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB,
            isoform B protein.
          Length = 1695

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 406  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 510
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA,
            isoform A protein.
          Length = 1711

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 406  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 510
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AY071302-1|AAL48924.1|  302|Drosophila melanogaster RE33041p
           protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 500 LSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTN 381
           L+ L T     N+  ++    NSAS+   DFL+  HT +N
Sbjct: 11  LALLATSQAEYNYNEKEAKAANSASSSGEDFLSDYHTPSN 50


>AE014134-486|AAF51198.2|  302|Drosophila melanogaster CG2973-PA
           protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 500 LSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTN 381
           L+ L T     N+  ++    NSAS+   DFL+  HT +N
Sbjct: 11  LALLATSQAEYNYNEKEAKAANSASSSGEDFLSDYHTPSN 50


>AE013599-325|AAF59274.2| 1307|Drosophila melanogaster CG11101-PA
           protein.
          Length = 1307

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 149 VGSCHQTRPSCSRRKNRQTREHLLVFFTNQRI 244
           V SCH  RP  SRRK+R+    ++ F    R+
Sbjct: 816 VSSCH-CRPGYSRRKHREPCRRVISFHLGMRV 846


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,742,458
Number of Sequences: 53049
Number of extensions: 493641
Number of successful extensions: 2480
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1983
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)