Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A01f
         (307 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4NYH8 Cluster: Pyridine nucleotide transhydrogenase; n...    32   2.9  
UniRef50_A0BTP1 Cluster: Chromosome undetermined scaffold_127, w...    31   3.8  
UniRef50_Q5P482 Cluster: Probable UbiD-like carboxylase subunit ...    31   6.7  

>UniRef50_A4NYH8 Cluster: Pyridine nucleotide transhydrogenase; n=1;
           Haemophilus influenzae 22.4-21|Rep: Pyridine nucleotide
           transhydrogenase - Haemophilus influenzae 22.4-21
          Length = 160

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 119 VRDDVSLLMLHSIHVYFK*FIRLFNFH*FSTC 214
           V + V L  +H++ V+F+ F R  NFH F  C
Sbjct: 127 VAEQVVLTNIHNVEVFFRYFYRCSNFHWFCCC 158


>UniRef50_A0BTP1 Cluster: Chromosome undetermined scaffold_127,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_127,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1298

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 305 IAQPIDL*LLHVKXKFSKSWLHSKNHQKQADTLRINE 195
           I + IDL L++V  KF   WL  + +QK+  TL++ E
Sbjct: 870 IYKQIDLCLINVNKKFFSLWLQRQLNQKREQTLKVLE 906


>UniRef50_Q5P482 Cluster: Probable UbiD-like carboxylase subunit
           encoded in anaerobic phenol operon; n=2;
           Rhodocyclaceae|Rep: Probable UbiD-like carboxylase
           subunit encoded in anaerobic phenol operon - Azoarcus
           sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
          Length = 448

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 35  STNEALAETWSQKNQKLSPQVRSTATLPVRDDV 133
           +T E LA+TW Q+ +   P V +T  +PV++ V
Sbjct: 74  TTEERLAQTWLQRKEHGVPPVVATGAVPVKEVV 106


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,100,560
Number of Sequences: 1657284
Number of extensions: 4194210
Number of successful extensions: 10376
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10376
length of database: 575,637,011
effective HSP length: 78
effective length of database: 446,368,859
effective search space used: 10266483757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)