Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A01f
         (307 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   2.9  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   2.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    20   6.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    20   6.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    19   8.8  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 65  SQKNQKLSPQVRSTATLP 118
           S K Q+ SPQ+   ++LP
Sbjct: 469 SSKRQRTSPQLSPMSSLP 486


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 147 YIRFTYTLNNSFGYLTFINSQ 209
           ++RFT+  +  F Y   +N+Q
Sbjct: 471 FVRFTHLQHQPFTYKITVNNQ 491


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 89  PQVRSTATLPVRDDVSLLMLH 151
           P   S  + PV+ DVSL  +H
Sbjct: 224 PTKSSPRSSPVQSDVSLSPVH 244


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 77  GSFATTSPPEPR 42
           GS+A   PP P+
Sbjct: 90  GSYAANCPPSPK 101


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
          protein.
          Length = 351

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +1

Query: 31 PINERGSGGDVVAKEPKTQPSGS 99
          PI+  G      A  P T  SGS
Sbjct: 21 PISSSGMTSPAAAPPPATTSSGS 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,732
Number of Sequences: 336
Number of extensions: 1089
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5518292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)