Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A01f
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   3.3  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    24   5.8  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    24   5.8  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    23   7.7  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    23   7.7  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 86  SPQVRSTATLPVRDDVSLLML 148
           SP+  ST TLP+R D  L  L
Sbjct: 251 SPEQTSTVTLPLRKDTVLFSL 271


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 195 KLNNRMNYLKYT*IECNINKETSSRTGKV 109
           KLN R+N ++   I+ + NK T+  T K+
Sbjct: 743 KLNERINVMRTQMIDKDENKTTALGTSKI 771


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 67  AKEPKTQPSGSIDRNLTSTR*R 132
           AK P+ QPS  +D + ++TR R
Sbjct: 113 AKRPRRQPSSFLDVHASNTRKR 134


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 144 CYIRFTYTLNNSFGYLTFINSQ 209
           C IR T+   ++ G+LTF++++
Sbjct: 592 CDIRLTFQSMSAMGHLTFLDNR 613


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +2

Query: 11  PARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRDDV 133
           PARG    ST+E+  E+ ++   +  P++   A +   +++
Sbjct: 133 PARGEGIISTSESSDESDAESETEAQPEISELAGIEPEENI 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,105,640
Number of Sequences: 5004
Number of extensions: 17331
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)