Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A01f
         (307 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    28   1.7  
08_01_0917 + 9033451-9036136,9036373-9036722                           27   2.2  
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    27   2.2  
11_01_0506 - 3910532-3911335                                           26   5.1  
04_04_0972 - 29804792-29805709                                         26   6.7  
12_02_1149 - 26467252-26468319,26468452-26469147,26469263-264694...    25   8.9  
11_02_0025 - 7492489-7492689                                           25   8.9  

>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 29   CRSTNEALAETWSQKNQKLS 88
            CR+  E L ETWSQK+  +S
Sbjct: 3165 CRAQLEQLQETWSQKDMTIS 3184


>08_01_0917 + 9033451-9036136,9036373-9036722
          Length = 1011

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 114 YQYAMTSLY*CYIRFTYTLNNSFGYLTFINSQRVS 218
           ++  +TSL   Y  FT TL +  G+LT INS  VS
Sbjct: 394 WKLKLTSLNLSYNLFTGTLPHDIGWLTRINSIYVS 428


>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 2   PTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRD 127
           PT+P+RGAP  S    ++ +W Q    LS +  +TA   V D
Sbjct: 96  PTTPSRGAPSASA-APVSSSWEQLKSLLSCR-SATAAARVHD 135


>11_01_0506 - 3910532-3911335
          Length = 267

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 137 KRRHRVLVRLRSIEPEG*VFGSFATTSPPEPRSLIGRVR 21
           KRR+    R       G V   +  TSPP P +++ R+R
Sbjct: 168 KRRNLSFHRRGESSSSGWVMHEYEITSPPLPATVLSRIR 206


>04_04_0972 - 29804792-29805709
          Length = 305

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 46  GSGGDVVAKEPKTQPSGS 99
           G  GDVVA+ P+ +P GS
Sbjct: 74  GGPGDVVARRPRGRPPGS 91


>12_02_1149 -
           26467252-26468319,26468452-26469147,26469263-26469409,
           26470936-26471274
          Length = 749

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 1   ANLSCSRRTLPINERGSGGDVVAKEPKTQPSGSIDRNLTSTR*RL 135
           A  + +  + P+ E     +V  K PK  P GS+ R + S R RL
Sbjct: 25  ATATATASSSPVAEAKVAVEVRWKGPKASPLGSLRRVMHSNRTRL 69


>11_02_0025 - 7492489-7492689
          Length = 66

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 56  ETWSQKNQKLSPQVRSTATLP---VRDDVSLLML 148
           E W ++NQ++     ST T P   ++++  L ML
Sbjct: 19  EIWKERNQRIFEHKESTTTYPLAKIKEEARLWML 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,224,100
Number of Sequences: 37544
Number of extensions: 113012
Number of successful extensions: 297
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)