Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A01f
         (307 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45644| Best HMM Match : zf-HYPF (HMM E-Value=3.7)                   27   2.3  
SB_2957| Best HMM Match : zf-HYPF (HMM E-Value=3.1)                    27   2.3  
SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)                    26   5.3  
SB_55350| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.0  
SB_46934| Best HMM Match : MORN (HMM E-Value=0)                        26   7.0  
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               26   7.0  
SB_53258| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  

>SB_45644| Best HMM Match : zf-HYPF (HMM E-Value=3.7)
          Length = 172

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 37  NERGSGGDVVAKEPKTQPSGSIDRNLT 117
           N+   G DV   EPK QP  +++RN T
Sbjct: 61  NDEYKGPDVFDLEPKLQPFSNMERNST 87


>SB_2957| Best HMM Match : zf-HYPF (HMM E-Value=3.1)
          Length = 150

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 37  NERGSGGDVVAKEPKTQPSGSIDRNLT 117
           N+   G DV   EPK QP  +++RN T
Sbjct: 83  NDEYKGPDVFDLEPKLQPFSNMERNST 109


>SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)
          Length = 1007

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 78  KNSALRFDRPQPYQYAMTSLY*CYIRFT 161
           K S  R D PQ ++ AMTSL   + R T
Sbjct: 644 KGSGTRGDNPQSFENAMTSLNDSFDRIT 671


>SB_55350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 17  RGAPCRSTNEA-LAETWSQKNQKLSPQVRSTATLPVRDDVS 136
           R  P  +T ++ L E W +   KL+  V S+ T  VRD VS
Sbjct: 5   RSLPSSATGDSHLDEIWLKFEAKLNEWVTSSLTTVVRDLVS 45


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = -3

Query: 275  HVKXKFSK---SWLHSKNHQKQADTL 207
            +++ KF+K   +W+H  ++QK  DT+
Sbjct: 1165 YIEDKFNKEHKAWMHKSDYQKNTDTV 1190


>SB_46934| Best HMM Match : MORN (HMM E-Value=0)
          Length = 391

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 16  SRRTLPINERGSGGDVVAKEPKTQPSGSIDRNLTST 123
           S   +P  ++  GG++   EP +  SGS   N ++T
Sbjct: 168 SNGVIPTKQKRQGGELPPAEPHSPKSGSESDNASNT 203


>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 1093

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 8   SPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRDD 130
           +PA+  P RST      +    ++++S Q  STAT+P+  D
Sbjct: 126 TPAQRIP-RSTASLSVSSLKPVDKQISKQATSTATVPLSGD 165


>SB_53258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 811

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 183 GYLTFINSQRVSLF 224
           G+L+FINSQ  SLF
Sbjct: 279 GFLSFINSQHASLF 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,353,942
Number of Sequences: 59808
Number of extensions: 129180
Number of successful extensions: 288
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)