Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A01f
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical ...    29   0.64 
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    27   2.6  
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    27   2.6  

>AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical
           protein Y14H12A.2 protein.
          Length = 101

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 125 DDVSLLMLHSIHVYFK*FIRLFNFH*FSTC-QPVFDDSYYVTTIC*IXFSHVI 280
           DD  +++L+ +H+    F+R+ N   F +C Q  F D+ +  T+  I  + +I
Sbjct: 33  DDDPIILLNCVHLLVLHFVRICNISSFKSCFQTWFSDNCWSCTVYCIPSNRLI 85


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 8   SPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRDDVS 136
           +P+RG P          T +  +   SPQ+  T TLP    V+
Sbjct: 256 APSRGRPSNKRQTTTTTTTTITSVSKSPQISDTNTLPTLPSVT 298


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 89  PQVRSTATLPVRDDVSLLMLHSIHVYFK*FIRLFNFH*FSTCQPVFDDS-YYVTTIC*IX 265
           P V     LP+    ++++ HS ++YF  F ++   H FS+   +F    YY T  C I 
Sbjct: 397 PVVFEIDFLPIFLVANIVIFHSFYLYFPRFFQV--SHNFSSFSVLFIYCIYYPTKKCPI- 453

Query: 266 FSHVITIGLWVEL 304
            SH   +  W E+
Sbjct: 454 -SHSFPVFPWSEI 465


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,204,530
Number of Sequences: 27780
Number of extensions: 98920
Number of successful extensions: 207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)