Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS308A01f
         (307 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   1.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   2.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   6.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   7.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   7.9  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 16 SRRTLPINERGSGGDVVAKEPKTQPSG 96
          +RR    + RG+GG    K P+T  SG
Sbjct: 3  TRRVKRSDGRGNGGTPEEKRPRTAFSG 29


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 71  KNQKLSPQVRSTATLPVRDDVSLLMLHSIH 160
           +N    PQ  + AT+P+     + M+H +H
Sbjct: 301 RNGLAFPQRETGATVPLHMQKYVQMIHDLH 330


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 71  KNQKLSPQVRSTATLPVRDDVSLLMLHSIH 160
           +N    PQ  + AT+P+     + M+H +H
Sbjct: 301 RNGLAFPQRETGATVPLHMQKYVQMIHDLH 330


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 77   GSFATTSPPEPRSLIGRVRREQE 9
            GS   TSPP P S+     R+++
Sbjct: 1390 GSDRLTSPPTPLSISRAGSRDED 1412


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 47  ALAETWSQKNQKLSPQVRSTATLPV 121
           ALAE ++Q+   +SP      T+ V
Sbjct: 890 ALAEPYNQRGTVVSPPPTKRRTMKV 914


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 47   ALAETWSQKNQKLSPQVRSTATLPV 121
            ALAE ++Q+   +SP      T+ V
Sbjct: 928  ALAEPYNQRGTVVSPPPTKRRTMKV 952


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,385
Number of Sequences: 438
Number of extensions: 1302
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)