Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS308A01f
(307 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17800.1 68417.m02656 DNA-binding protein-related contains Pf... 27 1.9
At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family pr... 27 2.5
At1g80850.1 68414.m09485 methyladenine glycosylase family protei... 27 2.5
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 26 4.3
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 26 5.7
At1g19485.1 68414.m02427 AT hook motif-containing protein contai... 26 5.7
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr... 25 7.6
At5g23800.1 68418.m02794 agenet domain-containing protein contai... 25 7.6
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr... 25 7.6
>At4g17800.1 68417.m02656 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 292
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 46 GSGGDVVAKEPKTQPSGS 99
G GGDVV + P+ +P GS
Sbjct: 74 GGGGDVVGRRPRGRPPGS 91
>At5g37800.1 68418.m04552 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 307
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Frame = -3
Query: 68 ATTSPPEPRSLIGRVRREQ--ERL 3
ATTSP +P+SL + RRE+ ERL
Sbjct: 204 ATTSPKDPQSLAAKNRRERISERL 227
>At1g80850.1 68414.m09485 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 327
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 1 ANLSCSRRTLPINERGSGGDVVAKEPKTQPSGSIDRNLTSTR 126
A+ SC L + SG V+ + S S+ RNLT R
Sbjct: 80 ASSSCESSPLSMTSTSSGKRVLRRSGSVSSSSSLRRNLTEER 121
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 10 SCSRRTLPINERGSGGDVVAKEPKTQPSG 96
S +RRT N+ G D+ K+P + SG
Sbjct: 31 SATRRTDVANDAGVSSDITTKKPDSDKSG 59
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 150 IRFTYTLNNSFGYLTFINSQRVSLFL 227
+R Y FG++TF++S+ V + L
Sbjct: 348 VRIPYQQKRMFGFVTFLHSETVRIIL 373
>At1g19485.1 68414.m02427 AT hook motif-containing protein contains
Pfam profile: PF00730 HhH-GPD superfamily base excision
DNA repair protein; contains Pfam PF02178: AT hook
motif; contains Pfam PF00400: WD domain, G-beta repeat
(5 copies); contains Prosite PS00354: HMG-I and HMG-Y
DNA-binding domain (A+T-hook)
Length = 815
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 56 ETWSQKNQKLSPQVRSTATLPVRDDVSLLMLHSIHVYF 169
ET K + P+ +STA LPV D +L + ++ V +
Sbjct: 221 ETTEPKKPRGRPRKKSTAELPVELDDDVLYVEALSVRY 258
>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 895
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 89 PQVRSTATLPVRDDVSLLMLHSIHVY 166
PQ R LPVR D+S +++ + VY
Sbjct: 73 PQGRQCYKLPVRKDLSSVLIRATFVY 98
>At5g23800.1 68418.m02794 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 552
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 19 RRTLPINERGSGGDVVAKEPKTQPSGSIDRNLTS 120
++TLP N+ GSG D + + + NL S
Sbjct: 329 KKTLPRNQNGSGNDSTLENENSNRKRKREENLCS 362
>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -3
Query: 65 TTSPPEPRSLIGRVRREQ--ERL 3
TTSP +P+SL + RRE+ ERL
Sbjct: 199 TTSPKDPQSLAAKNRRERISERL 221
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,767,775
Number of Sequences: 28952
Number of extensions: 89846
Number of successful extensions: 225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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