Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    29   0.42 
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   0.97 
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    27   1.3  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   2.2  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   2.2  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   6.8  
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    25   9.0  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   9.0  

>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 11/22 (50%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = -2

Query: 337 KRNSTVSQHVHRINY-FNFHQI 275
           KR S+V+ +VHR+NY +N+H +
Sbjct: 20  KRCSSVTDNVHRVNYCYNYHTV 41


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 183 VFTIENVQHVSPFI--NIFCETVNSRHVKK 266
           VF IEN++H+ P++  NI  ET+    V+K
Sbjct: 495 VFLIENLRHMFPYVTKNIISETLGKVAVRK 524


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 393 HSLEVRHFETGFIYLLHQKRGTALFHNTFTE 301
           H   V++F  GF+  L +  GT +++NT  E
Sbjct: 119 HYSFVKNFGPGFVSTLQESFGTGVYYNTHVE 149


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 313 VVKQCCSSFLVEEVNKSCLKMADLEAVLADVSYLMAMEKS 432
           VVK CC+  L+ E  ++    A  +A + + + L A E++
Sbjct: 314 VVKTCCTRCLLRERKRNARSQATKDACMPNYTKLKAYERN 353


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 468 DFFASSCCRSAFRFLHSHQVAHVCQHSLEVRHFETGFIYLL 346
           DFF+S C  S  + +  H       HSL +   +    YL+
Sbjct: 339 DFFSSKCIMSGSKIIELHMEKVKSLHSLSIICLDMAISYLM 379


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +3

Query: 45  ISFSGIINLFSTSN*YFKCLTSQKINFNSTKKLKYLFLFTYMLLKIVFTIENVQHVSPFI 224
           IS S +I+     N Y +       NF++ +K +  F +   LLK +  I+ V+ ++  +
Sbjct: 314 ISPSEVIDKIFNGNAYKRWTEENTSNFSNDQKAENPFEWATSLLKTISIIDEVELINKIL 373


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 459 ASSCCRSAFRFLHSHQVAHVCQHSLEVRHFETG-----FIYLLHQKRGTALFH 316
           A   CR A+    + ++  +C  SLE+ + E+      F  L +  R T  FH
Sbjct: 257 AKYICRLAYGLFEAPEIQIICDPSLEMMYVESHLNHAVFEILKNSLRATVEFH 309


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 195 ENVQHVSPFINIFCETVNSRHVKKVMTI 278
           E V++    INIFC   NS  V++V ++
Sbjct: 467 EAVRYTEMNINIFCHLTNSYPVEEVSSL 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,991
Number of Sequences: 5004
Number of extensions: 43666
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)