Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     31   0.56 
01_06_1016 + 33830751-33831387,33831470-33831527,33831620-338317...    29   3.0  
01_05_0272 + 20280557-20281220,20281799-20281938,20282035-202821...    29   3.0  
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252...    28   5.2  
04_04_0632 + 26738969-26739350,26739535-26739543,26739674-267405...    27   6.9  

>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = +1

Query: 295 NLFCERVVKQCCSSFLVEEVNKSCLKMADLEAVLADVSYLMAMEKSKCTPAARASKK 465
           N+F +++V++CC   +    N   +++ D+E VL+D   L   E +K   AA ASKK
Sbjct: 630 NMFIDKIVRKCCDLGVQMNRNPCIVQLLDME-VLSDPHQLFE-ELNKAKQAA-ASKK 683


>01_06_1016 +
           33830751-33831387,33831470-33831527,33831620-33831703,
           33831819-33831954,33833191-33833451
          Length = 391

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 340 LVEEVNKSCLKMADLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHK 507
           L + + KS    A L+   A  +   + EKS+    ARA+   +LP P+  SV  K
Sbjct: 36  LKKSLQKSLSMPASLDNAAAATTCAASPEKSRAADFARAAAASLLPPPTPASVSAK 91


>01_05_0272 +
           20280557-20281220,20281799-20281938,20282035-20282124,
           20282249-20282354,20282544-20282695,20282776-20282873,
           20282948-20283086,20283223-20283321,20283411-20283575
          Length = 550

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 341 RKEEQHCFTTRSQNKLFQLPPDSHNLLHMTT 249
           R +E  C  TR       LPP+S   LHMTT
Sbjct: 396 RSDEDECLATRLVGTPGYLPPESVLELHMTT 426


>09_04_0072 +
           14323449-14324274,14324351-14324447,14325175-14325277,
           14325359-14325412,14325495-14325569,14325597-14325650,
           14325687-14325755,14325840-14325923,14326115-14326312,
           14326428-14326927,14327011-14327140,14328226-14328317,
           14328776-14328954,14329114-14329316,14329398-14329499,
           14330047-14330209,14330690-14330979,14331088-14331225,
           14331311-14331390,14331510-14331606,14331685-14331814,
           14331921-14332162
          Length = 1301

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 394 LADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKY 510
           L D+  L+A   S C    R+SK +VL + + + ++H++
Sbjct: 747 LPDMERLLARLFSSCDKNGRSSKSVVLYEDASKRLLHQF 785


>04_04_0632 +
           26738969-26739350,26739535-26739543,26739674-26740545,
           26743048-26743098,26743966-26744127,26744278-26744519,
           26744772-26744859,26744964-26745158
          Length = 666

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 516 FHVFVHYTPNTWIWKNDFFASSCCRSAFRFLHSHQVAHVCQHSLEVRHFETG 361
           +H+F  + P++ +W N  +  +  R    +LH   +A V  H  ++    TG
Sbjct: 139 YHLFYQWNPDSAVWGNITWGHAVSRDLIHWLHL-PLAMVPDHWYDINGVWTG 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,970,987
Number of Sequences: 37544
Number of extensions: 288362
Number of successful extensions: 752
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)