Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12484| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   4e-14
SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)              31   0.58 
SB_21305| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_48575| Best HMM Match : CARD (HMM E-Value=5.3e-19)                  27   7.1  
SB_14016| Best HMM Match : rve (HMM E-Value=0.0027)                    27   7.1  
SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)              27   9.4  

>SB_12484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 37/39 (94%), Positives = 37/39 (94%)
 Frame = +1

Query: 370 KMADLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPS 486
           KMADLEAVLADVSYLMAMEKSK TPAARASKKI LPDPS
Sbjct: 142 KMADLEAVLADVSYLMAMEKSKSTPAARASKKICLPDPS 180


>SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
          Length = 641

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 355 LPPPPEKRNSTVSQHVHRINYFNFHQIVITFFT*RLFTVSQNMLMNGD 212
           LPP   K+   VS+  +     +FH +    F   LF + Q MLM GD
Sbjct: 383 LPPEETKQEGAVSRQTYAAYLRSFHDLGTGVFLIFLFAMCQVMLMFGD 430


>SB_21305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 423 HSHQVAHVCQHSLEVRHFETGFIYLLHQKRGT 328
           H+ QV H+  H+L+V H  +  + +LH    T
Sbjct: 104 HTLQVLHMSSHTLQVLHMSSHTLQVLHMSSHT 135



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 423 HSHQVAHVCQHSLEVRHFETGFIYLLHQKRGT 328
           H+ QV H+  H+L+V H  +  + +LH    T
Sbjct: 114 HTLQVLHMSSHTLQVLHMSSHTLQVLHMSSHT 145



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 423 HSHQVAHVCQHSLEVRHFETGFIYLLHQKRGT 328
           H+ QV H+  H+L+V H  +  + +LH    T
Sbjct: 124 HTLQVLHMSSHTLQVLHMSSHTLQVLHMSSHT 155


>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1665

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 342 GGGGK*ILSQNGGPRGCAGRRE-LLDGYGEIEMHSCSTS*QKNRSSRSKCSECNAQIHGK 518
           GGGG+ I   +GG  G A   + +L+G G         S   +RS   KCS  + ++  +
Sbjct: 140 GGGGRYISPGDGG--GVAAPFDAMLEGKGIGSRRGSQISVHSDRSMSMKCSHAHPRVRAE 197

Query: 519 K 521
           K
Sbjct: 198 K 198


>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 483 WIWKNDFFASSCCRSAFRFLHSHQVAHVCQHSL 385
           W W   +  ++ C  A   +H+H +  +C H+L
Sbjct: 73  WQWVIWWSLTTMCNPALTTMHNHTLTTMCNHTL 105


>SB_48575| Best HMM Match : CARD (HMM E-Value=5.3e-19)
          Length = 618

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 57  GIINLFSTSN*YFKCLTSQKINFNSTKKLKYLFLFTYMLLKIVFTIENVQHV 212
           GIIN+ ++ +   K L   ++      +L   FLF Y+  K +F   + ++V
Sbjct: 516 GIINMVTSQHIRAKILERNRVEIVQRLQLDRTFLFDYLRSKAIFDRTDCEYV 567


>SB_14016| Best HMM Match : rve (HMM E-Value=0.0027)
          Length = 430

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 329 QHCFTTRSQNKLFQLPPDSHNLLHMTTVHRFTEYVDEW 216
           Q C   R+Q +   L P  H+L  + T H FT++ + W
Sbjct: 166 QICNAFRNQQQKETLHP--HDLPGLPTTHEFTQFAEAW 201


>SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)
          Length = 651

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 426 EIEMHSCSTS*QKNRSSRSKCSECNAQIHG 515
           EIE H    S  +  SS+SK   CNA  HG
Sbjct: 152 EIEAHRWIISDLREGSSKSKPLNCNAGYHG 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,860,566
Number of Sequences: 59808
Number of extensions: 312578
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)