Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily ass...    85   2e-17
Z81059-4|CAB02928.2|  228|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine rec...    29   1.5  
U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine rec...    29   2.7  
U23453-9|AAC46755.1|  727|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81094-3|CAB03151.1|  477|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine rec...    27   8.1  
AF038613-10|AAB92047.1|  148|Caenorhabditis elegans Hypothetical...    27   8.1  

>U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 161 protein.
          Length = 707

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 40/49 (81%), Positives = 46/49 (93%)
 Frame = +1

Query: 373 MADLEAVLADVSYLMAMEKSKCTPAARASKKIVLPDPSVRSVMHKYMER 519
           MADLEAVLADVSYLMAMEKS+  PAARASK+IVLPDPSVRS+M K++E+
Sbjct: 1   MADLEAVLADVSYLMAMEKSRSQPAARASKRIVLPDPSVRSIMQKFLEK 49


>Z81059-4|CAB02928.2|  228|Caenorhabditis elegans Hypothetical
           protein F11F1.6 protein.
          Length = 228

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 209 CVTIHQHIL*NGEQSSCEEGYDYLVEVEIIYSVN 310
           CVT   H+L  G +S  E GY+Y+   E+  ++N
Sbjct: 54  CVTDSGHLLEVGSKSYVENGYEYMCAREVTDNLN 87


>U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 21 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 407 AT*WLWRNRNALLQHELAKKSFFQIQVFG 493
           A+ WLW++RNA L H +     FQ+ +FG
Sbjct: 41  ASYWLWKSRNARLFH-INVTIIFQVHLFG 68


>U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 22 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 407 AT*WLWRNRNALLQHELAKKSFFQIQVFG 493
           A+ WLW++RNA L H +     FQ+ +FG
Sbjct: 41  ASHWLWKSRNARLFH-INVIIIFQVHLFG 68


>U23453-9|AAC46755.1|  727|Caenorhabditis elegans Hypothetical
           protein B0252.1 protein.
          Length = 727

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 123 FNSTKKLKYLFLFTYMLLKIVFTIENVQHVSPFIN 227
           FNST+++KY F F      IV T + ++ +S + N
Sbjct: 69  FNSTQQIKYDFYFGSNYSTIVTTNDLIKEISEWFN 103


>Z81094-3|CAB03151.1|  477|Caenorhabditis elegans Hypothetical
           protein F58G11.4 protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 313 HVHRINYFNFHQIVITFFT*-RLFTVSQNMLMNGDTC*TFSIVKTIFN 173
           H+H  N   F  IV+       LFTV   +  NG++C   S+V   F+
Sbjct: 180 HIHSHNAAAFISIVLNISAIVALFTVYHEIERNGNSCSQRSVVSVFFH 227


>U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 20 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 407 AT*WLWRNRNALLQHELAKKSFFQIQVFG 493
           A+ WLW++RN  L H +     FQ+ +FG
Sbjct: 41  ASYWLWKSRNGKLFH-INVIIIFQVHLFG 68


>AF038613-10|AAB92047.1|  148|Caenorhabditis elegans Hypothetical
           protein F42A6.2 protein.
          Length = 148

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +1

Query: 298 LFCERVVKQCCSSFLVEEVNKSCLKMADLEAVLADV---SYLMAMEKSKCTPAARASKKI 468
           +FC   + +CCSS   +E  +  LK  D +  LAD    S L A   +   P  R++   
Sbjct: 40  VFCTFCLIRCCSSVPSKETREFFLKNLDFQ-FLADPEPRSTLAAPTPTPAAPELRSTLSA 98

Query: 469 VLPDPS 486
             P P+
Sbjct: 99  PTPTPA 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,333,932
Number of Sequences: 27780
Number of extensions: 262914
Number of successful extensions: 700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)