Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H11f
         (483 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    24   0.64 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   0.64 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   0.64 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   0.64 
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   2.6  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   3.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   4.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   7.9  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 419 KALRAILPDDLQKCEGVTPLRLRPPKILVTVF 324
           ++L +I+ +   K  G T +R+RPPK+  T +
Sbjct: 63  ESLASIIDEAATKVHGTT-VRVRPPKVYPTPY 93


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 419 KALRAILPDDLQKCEGVTPLRLRPPKILVTVF 324
           ++L +I+ +   K  G T +R+RPPK+  T +
Sbjct: 377 ESLASIIDEAATKVHGTT-VRVRPPKVYPTPY 407


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 419 KALRAILPDDLQKCEGVTPLRLRPPKILVTVF 324
           ++L +I+ +   K  G T +R+RPPK+  T +
Sbjct: 610 ESLASIIDEAATKVHGTT-VRVRPPKVYPTPY 640


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 419 KALRAILPDDLQKCEGVTPLRLRPPKILVTVF 324
           ++L +I+ +   K  G T +R+RPPK+  T +
Sbjct: 610 ESLASIIDEAATKVHGTT-VRVRPPKVYPTPY 640


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = -3

Query: 388 CRNVKV*LHYVCAHQRSW*QSLLQQVSECKYDEGWQHNAHRTNQ 257
           C N++      C+    W    L +  +C Y EGW   +   +Q
Sbjct: 200 CDNLQYSFDNQCSGTIDW---ALPKQEDCFYQEGWNGQSFDVSQ 240


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 480 CENATTVLNFLNKLQCL 430
           CEN  T ++ +N  QC+
Sbjct: 77  CENGGTCVDKINAFQCI 93


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 480 CENATTVLNFLNKLQCL 430
           CEN  T +   N+ QCL
Sbjct: 108 CENQATCVQNKNQYQCL 124


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 380 CEGVTPLRLRPPKILVTVFTPT 315
           C    PL   PP  L  +F PT
Sbjct: 171 CNNYLPLPQVPPLPLPPIFAPT 192


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 380 CEGVTPLRLRPPKILVTVFTPT 315
           C    PL   PP  L  +F PT
Sbjct: 171 CNNYPPLPQVPPLPLPPIFPPT 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,564
Number of Sequences: 336
Number of extensions: 2403
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)