Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H11f
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          83   9e-17
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.87 
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        29   2.7  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)                   28   4.6  
SB_15237| Best HMM Match : NHL (HMM E-Value=0)                         27   8.1  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 83.4 bits (197), Expect = 9e-17
 Identities = 45/100 (45%), Positives = 57/100 (57%)
 Frame = +1

Query: 181 TGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKR 360
           +G +K+P+ +DLVKT +FKELAPYDPDW+Y+R                        GRK 
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIR-----------------------AGRKN 38

Query: 361 NGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 480
            G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T
Sbjct: 39  RGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNIT 78


>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
 Frame = +1

Query: 121 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 297
           TV  V   K  KT          ++VP  ++ L  T R  E+  +   W  V+C      
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279

Query: 298 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD 462
           IY+ S +  + V K+  GRK    T +    S  +   +   S E L L  +V +
Sbjct: 280 IYLHSRLDTQPVNKVI-GRK---YTKTFVIMSGPNRPMRVPHSSEPLTLTNRVAE 330


>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 259 DWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEAL 438
           D +YVR A +     I +  G   + +I   R+R  VTPS    S G    + L  L+ +
Sbjct: 57  DQWYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRM 116

Query: 439 KL 444
           +L
Sbjct: 117 QL 118


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 378 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 470
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 21  TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 378 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 470
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 286 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316



 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 378 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 470
           TF   +   C +GF ++G  + +C +SSG+WS
Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 132 C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 251
           C   QDC + RC  +KNG  + T A G CK S    + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339


>SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)
          Length = 539

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 82  SKITIYVCKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKV-PEHMDLVKTARFKELAPYD 255
           S +   VC+  S+ + D+E  +IV+T   H  +   V   P+   L+ ++    +  +D
Sbjct: 423 SSLAAVVCEDFSIHIADIEMHRIVRTFTGHANRITDVSFSPDGRWLISSSMDSTIRTWD 481


>SB_15237| Best HMM Match : NHL (HMM E-Value=0)
          Length = 997

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 70  NFLNSKITIYVCKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPE--HMDLVKTARFKEL 243
           N L    T+ +C++      +++Q   ++ V++ L   GK+  P    +DL+ T     +
Sbjct: 538 NLLEKGSTLEICQLAEEVKANLQQQSSLEFVSSPLATKGKIFSPNTAFLDLLTTNGIGRV 597

Query: 244 APYDP 258
              DP
Sbjct: 598 TSVDP 602


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,306,755
Number of Sequences: 59808
Number of extensions: 312754
Number of successful extensions: 648
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)