Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H11f
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   141   2e-34
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   141   2e-34
Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  141 bits (342), Expect = 2e-34
 Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
 Frame = +1

Query: 112 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 291
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 292 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-G 468
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 469 RILT 480
           RIL+
Sbjct: 122 RILS 125


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  141 bits (342), Expect = 2e-34
 Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
 Frame = +1

Query: 112 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 291
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 292 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-G 468
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 469 RILT 480
           RIL+
Sbjct: 122 RILS 125


>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +1

Query: 76  LNSKITIYVCKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYD 255
           L S +T Y         +DVE+    K V  +L++ G +  P     +  +  +   P+D
Sbjct: 611 LASSLTSYAIPQFMRICQDVEKTGTFKLVKTNLQRLGIMDAPSDSIYIYNSENRNFVPFD 670

Query: 256 PDWFYVRCAAIL 291
            D   +RC   L
Sbjct: 671 ND---LRCKVSL 679


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 304 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 477
           I S +  K  T ++ G  R G  P      SGS  +K   +  A+K  EK +D GR L
Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKL 197


>Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical protein
            R05H10.6 protein.
          Length = 1364

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 16   FACPHGYSLNIRNIPLQ*NFLNSKITIYVCKMRSVTVKDVEQDK 147
            +  PHG  ++  +I LQ  F N  ++  V   R + ++D+ QDK
Sbjct: 1187 YKAPHGI-MSTNSIDLQVIFFNKSMSEIVPAERILAMQDMRQDK 1229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,217,285
Number of Sequences: 27780
Number of extensions: 226756
Number of successful extensions: 558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)