Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H11f
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.98 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   1.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   1.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.1  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 180 NGQSQGT*AHGSCKDSSLQRAGSV 251
           NG+ +   AHG  ++ +LQ+AG V
Sbjct: 419 NGEFEVEPAHGEDREEALQKAGIV 442


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 273 HIEPIRVIRSQLFEASCLYKIHVLRYLDFA--RFF 175
           H+E  R+IR+  FE++ + +  +   +D A  RFF
Sbjct: 383 HVEVARLIRNYYFESNKIDETTLKHLIDVASDRFF 417


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 273 HIEPIRVIRSQLFEASCLYKIHVLRYLDFA--RFF 175
           H+E  R+IR+  FE++ + +  +   +D A  RFF
Sbjct: 383 HVEVARLIRNYYFESNKIDETTLKHLIDVASDRFF 417


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 145 CLVQHPLL*RNASCRRKLLFYC*ESFIVAVYSVYL 41
           C   +P +  N + RRK LFY     +  V   YL
Sbjct: 218 CDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 314 LLE*RLSPRSLVGANVMELHLHISA 388
           LL+ RL+P S +  ++   H H+S+
Sbjct: 268 LLKARLNPNSSLQPSLASHHSHLSS 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,338
Number of Sequences: 438
Number of extensions: 2644
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)