Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H11f
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...   144   2e-35
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...   144   4e-35
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...   142   1e-34
At4g16095.1 68417.m02440 disease resistance protein-related cont...    29   1.2  
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote...    29   1.6  
At5g16500.1 68418.m01928 protein kinase family protein contains ...    29   2.2  
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /...    28   3.8  
At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,...    27   8.8  
At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,...    27   8.8  

>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  144 bits (350), Expect = 2e-35
 Identities = 65/120 (54%), Positives = 84/120 (70%)
 Frame = +1

Query: 121 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 300
           TVKDV     VK  A+HLK++GK+++P   D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65

Query: 301 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 480
           Y+R  +GV    +I+GG KRNG  P HFC+SSG IAR  LQ LE + +VE    GGR +T
Sbjct: 66  YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRIT 125


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score =  144 bits (348), Expect = 4e-35
 Identities = 63/120 (52%), Positives = 84/120 (70%)
 Frame = +1

Query: 121 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 300
           TVKDV     VK  A+HLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65

Query: 301 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 480
           Y+R  +GV    +I+GG KRNG  P HFC+SSG IAR  LQ LE + +VE    GGR +T
Sbjct: 66  YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRIT 125


>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score =  142 bits (344), Expect = 1e-34
 Identities = 61/120 (50%), Positives = 85/120 (70%)
 Frame = +1

Query: 121 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 300
           TVKDV   + VK  AAHLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6   TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65

Query: 301 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 480
           Y+R  +GV    +I+GG KRNG  P HFC+SSG +AR  LQ L+ + +V+    GGR +T
Sbjct: 66  YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKIT 125


>At4g16095.1 68417.m02440 disease resistance protein-related
           contains weak similarity to rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631
          Length = 187

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 466 HRPELSQQASMPPTIAKPCVQYCLM 392
           H P L  Q   PP +   C++YC M
Sbjct: 86  HMPRLPDQHRFPPNLTNICLRYCCM 110


>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 666

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 166 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 312
           +H   +  V  P   D  + T  F+ ++ ++  WF   C+A++ H+ + S
Sbjct: 15  SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64


>At5g16500.1 68418.m01928 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 73  FLNSKITIYVCKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 246
           F + K     C        +VE D+    V A  K+T + +  E    VKT  F+ELA
Sbjct: 11  FTSQKSRNAPCTTNETNDDNVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68


>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 444

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 401 LPDDLQKCEGVTPLRLRPPKILVTVFTPTGE 309
           L D    C G+ PLR R  KI +T F   G+
Sbjct: 21  LGDSEATCSGIVPLRYRYDKISITDFGGVGD 51


>At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,
           putative similar to UDP-glucose:sterol
           glucosyltransferase [Arabidopsis thaliana] GI:2462931;
           contains Pfam profile: PF03033 glycosyltransferase
           family 28 N-terminal domain
          Length = 615

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +1

Query: 121 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 297
           T+KD EQ  IV      L      +VPE++ LV      E  P+D  W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482


>At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,
           putative similar to UDP-glucose:sterol
           glucosyltransferase [Arabidopsis thaliana] GI:2462931;
           contains Pfam profile: PF03033 glycosyltransferase
           family 28 N-terminal domain
          Length = 615

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +1

Query: 121 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 297
           T+KD EQ  IV      L      +VPE++ LV      E  P+D  W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,445,273
Number of Sequences: 28952
Number of extensions: 203103
Number of successful extensions: 456
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)