Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    26   3.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.2  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    25   9.0  

>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 294 LSHGYNIKEFINNKYYSLLDDITKL 220
           L+  +N+K   +N  Y L+DD+ KL
Sbjct: 551 LAEKHNVKLLFHNVIYHLMDDVRKL 575


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 300 CLLSHGYNIKEFINNKYYSLLDDITKL 220
           CL  HG+N+    +N+Y  LL+  +KL
Sbjct: 18  CLPDHGWNLFVQSSNRYSKLLEADSKL 44


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 360 FTKIFNIYLLFKFRF*CSPCCLLSHGYNIK 271
           F  I N+   F F F     C+LSHG N++
Sbjct: 5   FIPIRNVSNEFNFSFQSFKECVLSHGSNLR 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,093
Number of Sequences: 5004
Number of extensions: 39695
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)