Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38248| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)                   31   0.58 
SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)                  30   1.0  
SB_38532| Best HMM Match : CRAM_rpt (HMM E-Value=2.1e-29)              29   2.3  
SB_56974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_13503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   9.4  
SB_46300| Best HMM Match : UAF_Rrn10 (HMM E-Value=4)                   27   9.4  
SB_10469| Best HMM Match : Exo_endo_phos (HMM E-Value=0.004)           27   9.4  

>SB_38248| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)
          Length = 374

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 401 NFLDYYR*FLLINISQKYLTYICYLNFVFNVRPVAYYHMATTLRNSL 261
           NF+ Y + F+ I +S K +  +CY N + N  P+ Y +    +R  +
Sbjct: 273 NFIPYDKPFIEIYVSTKAMLTMCYTNAIIN--PIIYLYCMREMRQRI 317


>SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)
          Length = 720

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -1

Query: 407 HSNFLDYYR*FLLINISQKYLTYICYLNFVFNVRPVAYYHMATTLRNSLTINII--VCLM 234
           HS    +Y  +LL N    Y T +    F F+  P+A++  +  L  + TIN++  + L+
Sbjct: 397 HSVLTSFYDSYLL-NSGVDYTTTVAINVFRFSGEPIAFFLSSMILNRAGTINVLFGIILV 455

Query: 233 T*LN*F 216
           T +N F
Sbjct: 456 TSVNLF 461


>SB_38532| Best HMM Match : CRAM_rpt (HMM E-Value=2.1e-29)
          Length = 263

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 377 IICNNLESSNAFSKIDLNTNQNVSNVCLVSNDVIGCNLIQPTSI 508
           I CN+  S N+  +  +  +  V +  +  N  I CN++Q  SI
Sbjct: 198 ISCNSATSCNSQHRTTMQHHATVQHHAISCNSAISCNIMQQCSI 241


>SB_56974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 785

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 368 LTKIICNNLESSNAF--SKIDLNTNQNVSNVCLVSNDVIGCNLIQP 499
           +T II N L  +  F  S++  NTN  ++N+CLV  D+I   L+ P
Sbjct: 386 ITNIIGNTLVLAIVFGNSRLQTNTNIFITNLCLV--DLISGILLMP 429


>SB_13503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 332 SRYMLNIFVKC*LTKIICNNLESSNAFSKIDLNTNQNVSNVCLVSN 469
           ++++ ++  KC L  +  NNL S N   K D   ++ +S +  +SN
Sbjct: 406 AKFLKHVLPKCHLLPMTLNNLNSLNFIPKKDYTKDRLMSGMLQLSN 451


>SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 888

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 341 YICYLNFVFNVRPVAYYHMATTLRNSLTINIIVCLMT*LN*FG 213
           YI +  ++  +  +AYY +A TL       +I C  T LN FG
Sbjct: 775 YISFSMYILLLSWLAYYPVAFTLEGWPYEAVIACATTLLNSFG 817


>SB_46300| Best HMM Match : UAF_Rrn10 (HMM E-Value=4)
          Length = 303

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 300 CLLSHGYNIKEFINNKYYSLLDD 232
           CLLS GY++ + +   +Y +L D
Sbjct: 36  CLLSRGYSVTDRVTRAFYDVLRD 58


>SB_10469| Best HMM Match : Exo_endo_phos (HMM E-Value=0.004)
          Length = 216

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -3

Query: 294 LSHGYNIKEFINNKYYSLLDDITKLIWHKTSLIHRLFLTKPSLYNGYGTEL 142
           L H    K+F++  Y + +   T++  H  +LI  +F    S  N Y   L
Sbjct: 146 LQHHDLTKQFLDTMYSTTISKPTRITSHSATLIDNIFTNDISNVNTYSALL 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,051
Number of Sequences: 59808
Number of extensions: 257795
Number of successful extensions: 489
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)