Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H10f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77589-1|AAB51233.1|  255|Homo sapiens MHC class II HLA-DQ-alpha...    30   5.7  
AY585236-1|AAT09985.1|  176|Homo sapiens MHC class II antigen pr...    30   5.7  

>U77589-1|AAB51233.1|  255|Homo sapiens MHC class II HLA-DQ-alpha
           chain protein.
          Length = 255

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 332 SRYMLNIFVKC*LTKIICNNLESSNAFSKIDLNTNQNVSNVCLVSN 469
           +++ LNI +KC  +    N +     FSK  +   Q  + +CLV N
Sbjct: 92  AKHNLNIMIKCYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDN 137


>AY585236-1|AAT09985.1|  176|Homo sapiens MHC class II antigen
           protein.
          Length = 176

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 332 SRYMLNIFVKC*LTKIICNNLESSNAFSKIDLNTNQNVSNVCLVSN 469
           +++ LNI +KC  +    N +     FSK  +   Q  + +CLV N
Sbjct: 64  AKHNLNIMIKCYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDN 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,599,095
Number of Sequences: 237096
Number of extensions: 1147031
Number of successful extensions: 1929
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1929
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)