Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36970.1 68414.m04608 hypothetical protein                          28   3.3  
At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase...    28   4.4  

>At1g36970.1 68414.m04608 hypothetical protein
          Length = 439

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 389 YYR*FLLINISQKYLTYICYLNFVFNVRPVAYYHMATTLRNSLTINI 249
           YY  FL+++++   + Y+ YLN    ++ ++      TL +S+  NI
Sbjct: 374 YYFKFLIMDVTHTLMLYLFYLNKEIKIQDLSLAENVDTLVHSVCKNI 420


>At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase,
           putative / 1-deoxyxylulose-5-phosphate synthase,
           putative / DXP-synthase, putative (DEF) (CLA1) identical
           to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate
           synthase, chloroplast precursor (EC 4.1.3.37)
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF
           (deficient in photosynthesis) protein [Arabidopsis
           thaliana] GI:1399261
          Length = 717

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 298 ATGRTLKTKFK*QIYVKYFCEMLI 369
           ATGR  KT  K Q Y  YF E L+
Sbjct: 387 ATGRQFKTTNKTQSYTTYFAEALV 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,041,282
Number of Sequences: 28952
Number of extensions: 184104
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)