Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    41   1e-04
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    37   0.002
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.73 
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   3.9  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   5.2  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   6.8  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.8  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   9.0  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   9.0  

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 21/32 (65%), Positives = 23/32 (71%)
 Frame = +1

Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTIGSNV 519
           +V   A GKTTILY+L LGE V T PTIG NV
Sbjct: 22  MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 53


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +1

Query: 439 ARGKTTILYQLLLGEAVHTRPTIGSNV 519
           A GKTTILY+L L ++V T PT+G NV
Sbjct: 31  AAGKTTILYKLKLNQSVVTIPTVGFNV 57


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 120 ILQHRRPRLPLMQLEAPCSFNFCSLRA 40
           I Q     LP + L +PCSF  CSLRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 122 WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 229
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -3

Query: 207 QRLCFLPLFPLS*NRAREPLMESTDPQCHILQHRRPRLPLMQLEAP 70
           +++ FL L PLS    ++  +  ++P+   +QH++  L  ++L  P
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP 180


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 147 MESTDPQCHILQHRRPRLPLMQLEAPCSF 61
           M+S   Q ++L   RP LPL     P  F
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 305 TSPVLDIAPGSDLFCFIWN*NA 370
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +2

Query: 335 SDLFCFIWN*NAFKFLINLSMRCXXXXXXPSCRIRHEAKPLFYTNYFLVKLYILGPP*GR 514
           S +F F+WN  A     +LS+R       P+  I   ++     NY  V L+ L  P  R
Sbjct: 169 SYMFQFVWNHQALAIFPDLSVRQIYKLPSPTANIVPLSQEFSQVNY--VSLFELLQPLSR 226


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 405 LHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTG 310
           LH+I KF  +L +    + +++    AMSR G
Sbjct: 119 LHQIKKFSSDLQSLKSSMGERQKQQAAMSRRG 150


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 53  QKLKEHGASSCISGKRGRRCCNIWHWGS 136
           Q   E  A +C  G  G  C  +W+W +
Sbjct: 394 QSSAEAAALACSGGSDGVTCGYMWYWNN 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,392
Number of Sequences: 5004
Number of extensions: 39985
Number of successful extensions: 82
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)