Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307H09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0842 + 6840943-6841288,6841800-6841970,6842762-6842832,684... 41 7e-04
05_05_0295 - 23912502-23912507,23912631-23912712,23913020-239131... 41 7e-04
03_06_0420 + 33794045-33794192,33794831-33794901,33795093-337952... 41 7e-04
01_06_1108 + 34574299-34574446,34575000-34575070,34575246-345753... 41 7e-04
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902... 41 7e-04
11_06_0218 + 21361975-21362314,21362463-21362545,21363870-213639... 40 0.001
10_08_1062 + 22626262-22626318,22626404-22626494,22626601-226267... 39 0.003
02_05_0413 + 28773869-28773925,28774045-28774135,28774515-287746... 39 0.003
02_01_0226 + 1476529-1476585,1477207-1477297,1478247-1478362,147... 38 0.004
06_01_0098 + 818374-818427,818537-818627,818753-818868,818962-81... 37 0.009
07_01_0844 + 6855195-6855342,6855752-6855802,6856460-6856530,685... 35 0.034
08_01_0921 + 9075409-9075511,9075606-9075689,9075744-9075806,907... 30 0.98
09_02_0338 + 7426999-7428322,7428390-7428646 28 5.2
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622 28 5.2
05_03_0618 - 16262826-16263097,16263111-16263183 27 6.9
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 9.1
09_04_0269 + 16265191-16265472,16265574-16266149 27 9.1
>07_01_0842 +
6840943-6841288,6841800-6841970,6842762-6842832,
6843068-6843187,6843654-6843772,6844045-6844126,
6844254-6844259
Length = 304
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +1
Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTIGSNV 519
+V A GKTTILY+L LGE V T PTIG NV
Sbjct: 145 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 176
>05_05_0295 -
23912502-23912507,23912631-23912712,23913020-23913138,
23913480-23913599,23913927-23913997,23914525-23914672
Length = 181
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +1
Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTIGSNV 519
+V A GKTTILY+L LGE V T PTIG NV
Sbjct: 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 53
>03_06_0420 +
33794045-33794192,33794831-33794901,33795093-33795212,
33795466-33795584,33795775-33795856,33795984-33795989
Length = 181
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +1
Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTIGSNV 519
+V A GKTTILY+L LGE V T PTIG NV
Sbjct: 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 53
>01_06_1108 +
34574299-34574446,34575000-34575070,34575246-34575365,
34575471-34575488,34575708-34575826,34576244-34576325,
34576537-34576542
Length = 187
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +1
Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTIGSNV 519
+V A GKTTILY+L LGE V T PTIG NV
Sbjct: 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 53
>01_01_1138 -
9019049-9019159,9019525-9019606,9020059-9020177,
9020977-9021096,9021313-9021383,9021801-9021948
Length = 216
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +1
Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTIGSNV 519
+V A GKTTILY+L LGE V T PTIG NV
Sbjct: 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 53
>11_06_0218 +
21361975-21362314,21362463-21362545,21363870-21363965,
21364451-21364813
Length = 293
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1
Query: 445 GKTTILYQLLLGEAVHTRPTIGSNV 519
GKTT LY+L LGEAV PTIGSNV
Sbjct: 29 GKTTTLYKLHLGEAVTAAPTIGSNV 53
>10_08_1062 +
22626262-22626318,22626404-22626494,22626601-22626716,
22627035-22627094,22627204-22627269,22627726-22627914
Length = 192
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +1
Query: 439 ARGKTTILYQLLLGEAVHTRPTIGSNV 519
A GKTTILY+L +GE + T PTIG NV
Sbjct: 27 AAGKTTILYKLHIGEVLSTVPTIGFNV 53
>02_05_0413 +
28773869-28773925,28774045-28774135,28774515-28774630,
28775627-28775686,28775767-28775832,28776499-28776693
Length = 194
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +1
Query: 439 ARGKTTILYQLLLGEAVHTRPTIGSNV 519
A GKTTILY+L +GE + T PTIG NV
Sbjct: 27 AAGKTTILYKLHIGEVLSTVPTIGFNV 53
>02_01_0226 +
1476529-1476585,1477207-1477297,1478247-1478362,
1478834-1478893,1479000-1479065,1479847-1480047
Length = 196
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1
Query: 439 ARGKTTILYQLLLGEAVHTRPTIGSNV 519
A GKTTILY+L +GE + T PT+G NV
Sbjct: 27 AAGKTTILYRLHMGEVLSTVPTVGFNV 53
>06_01_0098 +
818374-818427,818537-818627,818753-818868,818962-819087,
819175-819357
Length = 189
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1
Query: 439 ARGKTTILYQLLLGEAVHTRPTIGSNV 519
A GKTTILY+L +GE + + PTIG NV
Sbjct: 26 AAGKTTILYRLHIGEVLSSIPTIGFNV 52
>07_01_0844 +
6855195-6855342,6855752-6855802,6856460-6856530,
6856736-6856855,6857043-6857161,6857377-6857458,
6857592-6857597
Length = 198
Score = 35.1 bits (77), Expect = 0.034
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +1
Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTI 507
+V A GKTTILY+L LGE V T PTI
Sbjct: 22 MVGLDAAGKTTILYKLKLGEIVTTIPTI 49
>08_01_0921 +
9075409-9075511,9075606-9075689,9075744-9075806,
9077163-9077181,9078227-9078338,9078902-9078949,
9079372-9079502,9079673-9079757,9079776-9079784
Length = 217
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 445 GKTTILYQLLLGEAVHTRPT 504
GKTTILY+L +GE V T P+
Sbjct: 29 GKTTILYRLQMGEVVSTIPS 48
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -3
Query: 150 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 10
LM C L HR P L + L A L+AI KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443
>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
Length = 66
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Frame = +2
Query: 164 RFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 271
R +G+K RCC S R+ + R + C+ CCC
Sbjct: 17 RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 35 RIARREQKLKEHGASSCISGKRGRRC 112
R+ARR + LK + C G R RRC
Sbjct: 11 RMARRRRWLKRRRSGHCRCGLRSRRC 36
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 152 GSRARFQLSGNSGRKHSRCCTS 217
GSRA F+ NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 147 MESTDPQCHILQHRRPRLPL 88
M T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,345,554
Number of Sequences: 37544
Number of extensions: 284071
Number of successful extensions: 624
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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