Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307H09f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_56255| Best HMM Match : Arf (HMM E-Value=0) 41 7e-04
SB_11310| Best HMM Match : Arf (HMM E-Value=0) 39 0.003
SB_37042| Best HMM Match : Arf (HMM E-Value=0) 38 0.005
SB_53421| Best HMM Match : Arf (HMM E-Value=0) 36 0.020
SB_57342| Best HMM Match : Arf (HMM E-Value=0) 34 0.082
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 28 4.1
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15) 28 5.4
SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15) 27 7.1
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7) 27 9.4
SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25) 27 9.4
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +1
Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTIGSNV 519
+V A GKTTILY+L LGE V T PTIG NV
Sbjct: 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 53
>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
Length = 181
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +1
Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTIGSNV 519
+V A GKTTILY+L LGE V T PTIG NV
Sbjct: 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 53
>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
Length = 255
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/32 (62%), Positives = 22/32 (68%)
Frame = +1
Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTIGSNV 519
+V A GKTTILY L L E V+T PTIG NV
Sbjct: 95 MVGLDAAGKTTILYHLKLDEPVNTIPTIGFNV 126
>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
Length = 188
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = +1
Query: 439 ARGKTTILYQLLLGEAVHTRPTIGSNV 519
A GKTTILY+L L E V T PTIG NV
Sbjct: 29 AAGKTTILYKLKLKETVSTIPTIGFNV 55
>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
Length = 625
Score = 35.9 bits (79), Expect = 0.020
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1
Query: 445 GKTTILYQLLLGEAVHTRPTIGSNV 519
GKTTILY+L L E V T PT+G NV
Sbjct: 8 GKTTILYRLKLEEVVSTVPTLGFNV 32
>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
Length = 457
Score = 33.9 bits (74), Expect = 0.082
Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +1
Query: 436 SARG-KTTILYQLLLGEAVHTRPTIGSNV 519
S RG KTTILY+L L E V+T PT+ NV
Sbjct: 117 SGRGRKTTILYKLKLKETVNTVPTVAFNV 145
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 110 CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 229
C ++H G+++ I + R Q+ G+ R C TS+ ++
Sbjct: 6 CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45
>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
Length = 594
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 122 WHWGSVDSISGSRARFQLSGNSGRKHSR 205
WH S +S++G R R+ +S S H+R
Sbjct: 20 WHCYSEESLTGDRRRYNISKQSTLYHTR 47
>SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 467 WYKIVVLP--RAEFGTRVFFFFFYIASTNLLKI 375
WY+ L ++ FGTRV F+F ++ + NL+ +
Sbjct: 311 WYRFQPLNEIKSYFGTRVGFYFAWLGTYNLMLV 343
>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
Length = 378
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 122 WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILR 226
+ W VDSI+ S+A+F S + H T LR
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR 299
>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
Length = 534
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 162 AREPL-MESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAI 37
+REP S PQ H+L +R L + ++ CS CS+ I
Sbjct: 57 SREPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSMSFI 99
>SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)
Length = 303
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 358 PNKTEKVRSWSDVENG*CLASPHGVGATMAAA 263
P K +K R W D ++G C + +G T+AAA
Sbjct: 167 PEKLQKARDWDDWKDGLCGVA---IGYTVAAA 195
>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 445 GKTTILYQLLLGEAVHTRPTIGSNV 519
GKTTIL L + +H PT G N+
Sbjct: 29 GKTTILKSLASEDVLHITPTQGFNI 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,343,324
Number of Sequences: 59808
Number of extensions: 324520
Number of successful extensions: 666
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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