Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307H09f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-19|AAK18851.1| 181|Caenorhabditis elegans Adp-ribosylati... 41 6e-04
AY519855-1|AAR89636.1| 180|Caenorhabditis elegans ADP-ribosylat... 41 6e-04
AF045644-6|AAC02598.1| 180|Caenorhabditis elegans Adp-ribosylat... 41 6e-04
AL117204-5|CAB55153.1| 175|Caenorhabditis elegans Hypothetical ... 40 0.001
Z49967-8|CAA90255.1| 180|Caenorhabditis elegans Hypothetical pr... 38 0.003
U70852-7|AAK29813.1| 179|Caenorhabditis elegans Adp-ribosylatio... 38 0.003
Z22181-6|CAA80185.1| 178|Caenorhabditis elegans Hypothetical pr... 37 0.010
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 32 0.29
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 31 0.38
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 31 0.38
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 0.66
Z93378-2|CAB07583.1| 184|Caenorhabditis elegans Hypothetical pr... 28 3.5
>U32305-19|AAK18851.1| 181|Caenorhabditis elegans Adp-ribosylation
factor relatedprotein 1.2 protein.
Length = 181
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +1
Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTIGSNV 519
+V A GKTTILY+L LGE V T PTIG NV
Sbjct: 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 53
>AY519855-1|AAR89636.1| 180|Caenorhabditis elegans ADP-ribosylation
factor related(20.5 kD) (arf-3) protein.
Length = 180
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +1
Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTIGSNV 519
+V A GKTTILY+L LGE V T PTIG NV
Sbjct: 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 53
>AF045644-6|AAC02598.1| 180|Caenorhabditis elegans Adp-ribosylation
factor relatedprotein 3 protein.
Length = 180
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +1
Query: 424 LVPNSARGKTTILYQLLLGEAVHTRPTIGSNV 519
+V A GKTTILY+L LGE V T PTIG NV
Sbjct: 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 53
>AL117204-5|CAB55153.1| 175|Caenorhabditis elegans Hypothetical
protein Y116A8C.12 protein.
Length = 175
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +1
Query: 439 ARGKTTILYQLLLGEAVHTRPTIGSNV 519
A GKTTILY+L LG++V T PT+G NV
Sbjct: 23 AAGKTTILYKLKLGQSVTTIPTVGFNV 49
>Z49967-8|CAA90255.1| 180|Caenorhabditis elegans Hypothetical
protein F54C9.10 protein.
Length = 180
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +1
Query: 445 GKTTILYQLLLGEAVHTRPTIGSNV 519
GKTTILY+L +GE V T PTIG NV
Sbjct: 28 GKTTILYRLQVGEVVTTIPTIGFNV 52
>U70852-7|AAK29813.1| 179|Caenorhabditis elegans Adp-ribosylation
factor relatedprotein 1.1 protein.
Length = 179
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +1
Query: 445 GKTTILYQLLLGEAVHTRPTIGSNV 519
GKTTILY+L L E V+T PTIG NV
Sbjct: 29 GKTTILYKLKLNETVNTIPTIGFNV 53
>Z22181-6|CAA80185.1| 178|Caenorhabditis elegans Hypothetical
protein ZK632.8 protein.
Length = 178
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 445 GKTTILYQLLLGEAVHTRPTIGSNV 519
GKTTILY + + V T+PTIGSNV
Sbjct: 29 GKTTILYNYVTKDQVETKPTIGSNV 53
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 80 SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 184
+C SG +G RC C HWGS + G+ R +GN
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.5 bits (68), Expect = 0.38
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +2
Query: 65 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 235
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 236 GRQHCVTVDCCCHGS 280
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 62 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 241
KE+G CI G G C + +G R + + RK RC L +SG
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194
Query: 242 QHC 250
+HC
Sbjct: 1195 EHC 1197
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 31.5 bits (68), Expect = 0.38
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +2
Query: 65 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFS 235
EH SC+SG G +C C + D ISG S G + +C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249
Query: 236 GRQHCVTVDCCCHGS 280
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 62 KEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGR 241
KE+G CI G G C + +G R + + RK RC L +SG
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194
Query: 242 QHC 250
+HC
Sbjct: 1195 EHC 1197
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 30.7 bits (66), Expect = 0.66
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -1
Query: 278 YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 126
YH +S QL GH +V CLCSS +S S + +SQ TP+
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946
>Z93378-2|CAB07583.1| 184|Caenorhabditis elegans Hypothetical
protein F19H8.3 protein.
Length = 184
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +1
Query: 445 GKTTILYQLLLGEAVHTRPTIGSNV 519
GKTTIL QL + H PT G NV
Sbjct: 29 GKTTILKQLSSEDVQHVTPTKGFNV 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,933,704
Number of Sequences: 27780
Number of extensions: 237791
Number of successful extensions: 456
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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