Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         29   3.1  
SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)                    27   7.1  
SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)               27   9.4  

>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = -2

Query: 475  LKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLKMS---- 308
            L+ GST   S++ IA       +T L S  F       R Y   H T Y  YL +S    
Sbjct: 868  LESGSTLLASDDGIAPNKRTKVYTSLSSDVFY------RFYVYAHTT-YTTYLCLSVNAP 920

Query: 307  -TTTCNCNSRDRVV 269
             T  C  NSRDRV+
Sbjct: 921  CTQACRLNSRDRVL 934


>SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)
          Length = 445

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 142 VNASGDRKAVGHDGEVAGLPDIYSWF-ITPF*TTKDTV 32
           V   GD   + HDG+ A L ++++   +TP+  + DT+
Sbjct: 404 VKCEGDEPVIMHDGKEATLREVFAMLNLTPYDLSVDTL 441


>SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)
          Length = 354

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 374 QGNELPTDEFSMLVYTIAVGNSLIRGIGCGTELQSEVVVSVN 499
           Q NE+   +FS +  T+       R IGC T  Q + VV+ N
Sbjct: 274 QHNEMEISKFSTVTATVLGVQKASRSIGC-TSCQRQTVVTPN 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,507,933
Number of Sequences: 59808
Number of extensions: 274311
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)