Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    30   1.1  
At5g62220.1 68418.m07813 exostosin family protein contains Pfam ...    28   3.3  
At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329...    27   7.7  

>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|P41410
           DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1256

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/84 (26%), Positives = 39/84 (46%)
 Frame = +3

Query: 15  IIHEHITVSLVV*KGVMNHE*MSGRPATSPSCPTALRSPEAFTIVPSSKASLNWRL*MKN 194
           I  + I  ++V   GV +H      P  S   P+A  S   ++++P  K  L+    +  
Sbjct: 625 INEDDINTTIVNQDGVESHTFTI--PVASSDMPSAEESDNVWSLIPQLKRKLH----LHQ 678

Query: 195 RTSFSYLAGWKNHCSLVLSALLPP 266
           + +F +L  WKN    V+ A++ P
Sbjct: 679 KKAFEFL--WKNLAGSVVPAMMDP 700


>At5g62220.1 68418.m07813 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 517

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = +3

Query: 90  PATSPSCPTAL----RSPEAFTIVPSSKASLNWRL*MKNRTSFSYLAGWKNHCSLVLSAL 257
           P ++PS P  L    R+P++ T +   K S N    + NR+S  Y+A  ++HC+ ++ +L
Sbjct: 3   PVSNPSSPEHLLKKSRTPDSTTSI-DRKNSFNSLHSVGNRSS--YIAASRSHCTWLILSL 59

Query: 258 L 260
           L
Sbjct: 60  L 60


>At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 360

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 313 MSTTTCNCNSRDRVVYGGNSADSTREQW 230
           +ST++   +SR R   GGN A+ + E+W
Sbjct: 32  LSTSSTESSSRTRGGGGGNRAEKSSEEW 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,995,142
Number of Sequences: 28952
Number of extensions: 183717
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)