Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0571 - 25071440-25071607,25071711-25072383,25072449-25073242     29   1.7  
04_01_0377 - 4970034-4970687                                           28   5.2  
04_01_0555 + 7152196-7153065,7154805-7154960,7155058-7155130,715...    27   9.1  

>11_06_0571 - 25071440-25071607,25071711-25072383,25072449-25073242
          Length = 544

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 344 LCSIAVYCGFCSLHRSTLC 400
           LC I + CG CSLH   LC
Sbjct: 505 LCYITMNCGACSLHAKQLC 523


>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 167 CGSDDRSGGCYKG 129
           CGS  +SGGCYKG
Sbjct: 178 CGSGCQSGGCYKG 190


>04_01_0555 +
           7152196-7153065,7154805-7154960,7155058-7155130,
           7156261-7156367
          Length = 401

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +2

Query: 299 CSCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLH--RSTLCFC---SIRRPQVKE 463
           C CS C  + ++    CS    C F  +  +TL   ++H  RS L  C   +I+ P++  
Sbjct: 173 CICSSCPILEAMELKSCS----CEFNKIESATLKSLAIHGCRSCLLECTTLAIKTPRLTS 228

Query: 464 L 466
           L
Sbjct: 229 L 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,240,928
Number of Sequences: 37544
Number of extensions: 179970
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)