Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307H07f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.047
SB_54038| Best HMM Match : CHCH (HMM E-Value=0.44) 33 0.19
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_12076| Best HMM Match : CHCH (HMM E-Value=0.28) 31 0.76
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) 29 3.1
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 28 4.1
SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8) 28 5.4
SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 28 5.4
SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4) 28 5.4
SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5) 28 5.4
SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6) 27 7.1
SB_59484| Best HMM Match : CHCH (HMM E-Value=0.18) 27 7.1
SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_16920| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_49938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 34.7 bits (76), Expect = 0.047
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 338 SSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRPQVKELNKPRP 481
S CSI G+CS+H ++ + S+H ++ +CSI P V+ P P
Sbjct: 753 SGYCSIYFASGYCSIHFASSVYFSIHLAS-GYCSILHPVVEVQLTPMP 799
>SB_54038| Best HMM Match : CHCH (HMM E-Value=0.44)
Length = 75
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -3
Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQL 301
R +Q H + RC +Q H + RC +Q + + + R +QP ++
Sbjct: 23 RCTQQPHEMSRCTQQPHEMSRCTQQPHEMSRCTQPQHEMSRCTQQPNEM 71
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = -3
Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQL 301
R +Q + + RC + H + RC +Q + + + R +QP ++
Sbjct: 3 RCTQQPNEMSRCTQPPHEMSRCTQQPHEMSRCTQQPHEMSRCTQQPHEM 51
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 30.7 bits (66), Expect = 0.76
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = -3
Query: 438 EQKHRVLRCKEQ---KHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQ 298
E +HR L KEQ KHR L ++QK Q+ + ++L+ ++ E+ +QLQ
Sbjct: 391 EIRHRQL-LKEQEELKHRKLLQEQQKLQHKKLQEEKLKHQKQEEEQQQLQ 439
>SB_12076| Best HMM Match : CHCH (HMM E-Value=0.28)
Length = 115
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -3
Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVLP 280
R +Q H + RC + H + RC +Q + + + R +QP ++ T P
Sbjct: 53 RCTQQPHEMSRCTQPPHEMSRCTQQPNEMSRCTQQPNEMSRCTQQPNKMSRCTQQP 108
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = -3
Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVLP 280
R +Q H + RC +Q H + RC + + + R +QP ++ T P
Sbjct: 3 RCTQQPHEMSRCTQQPHEMSRCTQPPHEMSRCTQPPHEMSRCTQQPNEMSRCTQQP 58
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = -3
Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVLP 280
R +Q H + RC + H + RC + + + + R +QP ++ T P
Sbjct: 13 RCTQQPHEMSRCTQPPHEMSRCTQPPHEMSRCTQQPNEMSRCTQQPHEMSRCTQPP 68
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = -3
Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVLP 280
R +Q + + RC +Q H + RC + + + + R +QP ++ T P
Sbjct: 43 RCTQQPNEMSRCTQQPHEMSRCTQPPHEMSRCTQQPNEMSRCTQQPNEMSRCTQQP 98
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -3
Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQL 301
R + H + RC +Q + + RC +Q + + + + R +QP ++
Sbjct: 63 RCTQPPHEMSRCTQQPNEMSRCTQQPNEMSRCTQQPNKMSRCTQQPHEM 111
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = -3
Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVLP 280
R + H + RC +Q + + RC +Q + + R +QP ++ T P
Sbjct: 33 RCTQPPHEMSRCTQQPNEMSRCTQQPHEMSRCTQPPHEMSRCTQQPNEMSRCTQQP 88
>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
Length = 303
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 305 CSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 433
C CSY + R +LC+ +C H S LC H++ C+
Sbjct: 87 CRTCSYCKKGRYNLCAKMNFCATPPYHGS-LCRRYNHQADFCY 128
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 290 VRSCSCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCFCSI 442
V S SC GC S R + S++ C C H T+ S ++ C C +
Sbjct: 25 VVSLSCRGCVVSLSCRDCVVSVSCLCRIC--HVVTVSNLSHDVTSSCLCHV 73
>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
Length = 430
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 302 SCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSL 412
S GC Y+ ++R SLC++ C F +H S+L F L
Sbjct: 316 SVRGCRYVHNVRVSLCTL---CAFRYVH-SSLWFSEL 348
>SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8)
Length = 235
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -3
Query: 381 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 205
KE+ + + + KEL ++ M +Q QLQ + + +V Q ++ +Q Q + Q+QQ
Sbjct: 139 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 198
Query: 204 LDR 196
L +
Sbjct: 199 LQQ 201
>SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -3
Query: 381 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 205
KE+ + + + KEL ++ M +Q QLQ + + +V Q ++ +Q Q + Q+QQ
Sbjct: 31 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 90
Query: 204 LDR 196
L +
Sbjct: 91 LQQ 93
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -1
Query: 446 DEWSRSIGCC---DVRSRSIGCCD 384
D+ + S GCC DV++ S GCCD
Sbjct: 44 DDVNNSSGCCCDDDVKNSSGGCCD 67
>SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -3
Query: 381 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 205
KE+ + + + KEL ++ M +Q QLQ + + +V Q ++ +Q Q + Q+QQ
Sbjct: 30 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 89
Query: 204 LDR 196
L +
Sbjct: 90 LQQ 92
>SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4)
Length = 167
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -3
Query: 381 KEQKPQYTAMLHKELRSER-M*EQPEQLQLRTVLPLGLLVWQLERSCMKQGQLPKEQRQQ 205
KE+ + + + KEL ++ M +Q QLQ + + +V Q ++ +Q Q + Q+QQ
Sbjct: 71 KERADKNSELREKELNMKKEMQQQQLQLQQKNTEMMQAMVQQQQQQQQQQPQQQQPQQQQ 130
Query: 204 LDR 196
L +
Sbjct: 131 LQQ 133
>SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)
Length = 334
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = +2
Query: 296 SCSCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRPQV 457
+CSC C R L S G H + C C LHR + CS R V
Sbjct: 277 TCSCR-CVLHRGLMSMCFPSRANVGV--FHIACSCLCVLHRVLMSMCSSSRAHV 327
>SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)
Length = 810
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 287 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSL--HRSTL--CFCSLHR-STLCFCSIRRP 451
T + C+ S+ +LRS +C++ C+L H++TL C+L +TLC S +
Sbjct: 209 TAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKT 268
Query: 452 QVKEL 466
++ L
Sbjct: 269 TLRSL 273
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 287 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSL--HRSTL--CFCSLHR-STLCFCSIRRP 451
T + C+ S+ +LRS +C++ C+L H++TL C+L +TLC S +
Sbjct: 347 TAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTADTTLCTLSSHKT 406
Query: 452 QVKEL 466
++ L
Sbjct: 407 TLRSL 411
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 287 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSL--HRSTL--CFCSLHR-STLCFCSIRRP 451
T + C+ S+ +LRS +C++ C+L H++TL C+L +TLC S +
Sbjct: 596 TAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKTTLRSLVCTLTAGTTLCTLSSHKT 655
Query: 452 QVKEL 466
++ L
Sbjct: 656 TLRSL 660
>SB_59484| Best HMM Match : CHCH (HMM E-Value=0.18)
Length = 125
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -3
Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQL 301
R + H + RC +Q +++ RC +Q + + + R +QP ++
Sbjct: 73 RCTQPPHEMSRCTQQPNKMSRCTQQPNEMGRCTQQPNKMSRCTQQPHEM 121
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = -3
Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVLP 280
R + H + RC + H + RC +Q + + + R +QP ++ T P
Sbjct: 63 RCTQPPHEMSRCTQPPHEMSRCTQQPNKMSRCTQQPNEMGRCTQQPNKMSRCTQQP 118
>SB_22132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/86 (23%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = -3
Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQLRTVLPLGLL 268
++ +Q+ ++ + ++Q+ R+ + ++Q+P+ ++ R ++ +QP Q + P L
Sbjct: 57 QQQQQQQQLQQQQQQQPRLQQQQQQQPRLKQQQQQQPRLKQQQQQPRLKQQQQQQP-RLK 115
Query: 267 VWQLERSCMKQGQLP--KEQRQQLDR 196
Q + +Q Q P K+Q+QQ R
Sbjct: 116 QQQQQPRLQQQQQQPRLKQQQQQQPR 141
>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 287 TVRSCSCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLC 400
T R C+ GC + SS S +V CG+ R C
Sbjct: 734 TTRRCNPGGCKTHWFIGSSFTSCSVTCGYGVKERLVFC 771
>SB_16920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -1
Query: 335 VASVCRNNRSSCSYVRCC 282
VAS C++NRS+ +Y+RCC
Sbjct: 134 VASRCQSNRST-NYLRCC 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,529,675
Number of Sequences: 59808
Number of extensions: 198503
Number of successful extensions: 616
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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