Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307H07f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK126025-1|BAC86399.1| 804|Homo sapiens protein ( Homo sapiens ... 31 2.4
AK126902-1|BAC86743.1| 247|Homo sapiens protein ( Homo sapiens ... 31 3.2
AK090647-1|BAC03496.1| 353|Homo sapiens protein. 31 3.2
BC107139-1|AAI07140.1| 767|Homo sapiens patched domain containi... 30 4.3
DQ104738-1|AAZ13595.1| 462|Homo sapiens hypothetical protein FL... 29 7.5
BC130341-1|AAI30342.1| 752|Homo sapiens C20orf12 protein protein. 29 7.5
AL121893-2|CAI12510.1| 550|Homo sapiens chromosome 20 open read... 29 7.5
AL049646-1|CAI21830.1| 550|Homo sapiens chromosome 20 open read... 29 7.5
AK131451-1|BAD18596.1| 574|Homo sapiens protein ( Homo sapiens ... 29 7.5
AK001462-1|BAA91706.1| 503|Homo sapiens protein ( Homo sapiens ... 29 7.5
AF123655-1|AAD23836.1| 537|Homo sapiens FEZ1 protein. 29 9.9
>AK126025-1|BAC86399.1| 804|Homo sapiens protein ( Homo sapiens
cDNA FLJ44037 fis, clone TESTI4028823. ).
Length = 804
Score = 31.1 bits (67), Expect = 2.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 353 IAVYCGFCSLHRSTLCFCSLHRSTLCFC 436
+A+Y G S RS CFC +TL FC
Sbjct: 499 LALYTGIMSSFRSVQCFCIYTGTTLLFC 526
>AK126902-1|BAC86743.1| 247|Homo sapiens protein ( Homo sapiens
cDNA FLJ44954 fis, clone BRAWH2010364. ).
Length = 247
Score = 30.7 bits (66), Expect = 3.2
Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +2
Query: 299 CSCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCF--CSLHRSTLC 430
C CS SLR S C CSLH S C CSLH S C
Sbjct: 89 CCSLHCSPCCSLRCSPCCSLRCSPCCSLHCSPCCSLQCSLHCSPHC 134
>AK090647-1|BAC03496.1| 353|Homo sapiens protein.
Length = 353
Score = 30.7 bits (66), Expect = 3.2
Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +2
Query: 299 CSCSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCF--CSLHRSTLC 430
C CS SLR S C CSLH S C CSLH S C
Sbjct: 89 CCSLHCSPCCSLRCSPCCSLRCSPCCSLHCSPCCSLQCSLHCSPHC 134
>BC107139-1|AAI07140.1| 767|Homo sapiens patched domain containing
3 protein.
Length = 767
Score = 30.3 bits (65), Expect = 4.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 353 IAVYCGFCSLHRSTLCFCSLHRSTLCFC 436
+A+Y G S RS CFC TL FC
Sbjct: 499 LALYTGIMSSFRSVQCFCIYTGMTLLFC 526
>DQ104738-1|AAZ13595.1| 462|Homo sapiens hypothetical protein
FLJ10600 protein.
Length = 462
Score = 29.5 bits (63), Expect = 7.5
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +2
Query: 308 SGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRPQVKELNKPRP 481
+GCS +S A +CG C + +L SL RS RP + LN P P
Sbjct: 74 AGCSVCPKCGASNHLSARFCGSCGICVKSLVKLSLDRSLALAAEEPRPFSESLNIPLP 131
>BC130341-1|AAI30342.1| 752|Homo sapiens C20orf12 protein protein.
Length = 752
Score = 29.5 bits (63), Expect = 7.5
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +2
Query: 308 SGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRPQVKELNKPRP 481
+GCS +S A +CG C + +L SL RS RP + LN P P
Sbjct: 364 AGCSVCPKCGASNHLSARFCGSCGICVKSLVKLSLDRSLALAAEEPRPFSESLNIPLP 421
>AL121893-2|CAI12510.1| 550|Homo sapiens chromosome 20 open reading
frame 12 protein.
Length = 550
Score = 29.5 bits (63), Expect = 7.5
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +2
Query: 308 SGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRPQVKELNKPRP 481
+GCS +S A +CG C + +L SL RS RP + LN P P
Sbjct: 162 AGCSVCPKCGASNHLSARFCGSCGICVKSLVKLSLDRSLALAAEEPRPFSESLNIPLP 219
>AL049646-1|CAI21830.1| 550|Homo sapiens chromosome 20 open reading
frame 12 protein.
Length = 550
Score = 29.5 bits (63), Expect = 7.5
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +2
Query: 308 SGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRPQVKELNKPRP 481
+GCS +S A +CG C + +L SL RS RP + LN P P
Sbjct: 162 AGCSVCPKCGASNHLSARFCGSCGICVKSLVKLSLDRSLALAAEEPRPFSESLNIPLP 219
>AK131451-1|BAD18596.1| 574|Homo sapiens protein ( Homo sapiens
cDNA FLJ16603 fis, clone TESTI4008058. ).
Length = 574
Score = 29.5 bits (63), Expect = 7.5
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +2
Query: 308 SGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRPQVKELNKPRP 481
+GCS +S A +CG C + +L SL RS RP + LN P P
Sbjct: 364 AGCSVCPKCGASNHLSARFCGSCGICVKSLVKLSLDRSLALAAEEPRPFSESLNIPLP 421
>AK001462-1|BAA91706.1| 503|Homo sapiens protein ( Homo sapiens
cDNA FLJ10600 fis, clone NT2RP2004999. ).
Length = 503
Score = 29.5 bits (63), Expect = 7.5
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +2
Query: 308 SGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRPQVKELNKPRP 481
+GCS +S A +CG C + +L SL RS RP + LN P P
Sbjct: 115 AGCSVCPKCGASNHLSARFCGSCGICVKSLVKLSLDRSLALAAEEPRPFSESLNIPLP 172
>AF123655-1|AAD23836.1| 537|Homo sapiens FEZ1 protein.
Length = 537
Score = 29.1 bits (62), Expect = 9.9
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 441 MEQKHRVLRCKEQKHRVLRCKEQKPQ-YTAMLHKELRSERM*EQ 313
+ +KH L KE+K +V++ ++Q Q Y AM + R E+ +Q
Sbjct: 464 LREKHERLVWKEEKEKVIQYQKQLQQSYVAMYQRNQRLEKALQQ 507
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,866,679
Number of Sequences: 237096
Number of extensions: 942349
Number of successful extensions: 6418
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6414
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -