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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    29   2.0  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U46670-3|AAP46279.1|  312|Caenorhabditis elegans Nuclear hormone...    28   4.7  
U46670-2|AAC48174.4|  440|Caenorhabditis elegans Nuclear hormone...    28   4.7  
U46670-1|AAP46277.1|  445|Caenorhabditis elegans Nuclear hormone...    28   4.7  
AY204166-1|AAO39170.1|  436|Caenorhabditis elegans nuclear recep...    28   4.7  
AY204165-1|AAO39169.1|  445|Caenorhabditis elegans nuclear recep...    28   4.7  
AY204164-1|AAO39168.1|  440|Caenorhabditis elegans nuclear recep...    28   4.7  
AY204163-1|AAO39167.1|  440|Caenorhabditis elegans nuclear recep...    28   4.7  
Z68108-15|CAJ58502.1|  582|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z68108-5|CAD44152.2|  725|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AY390537-1|AAQ94949.1|  692|Caenorhabditis elegans SMA-9 class B...    27   6.2  
AY389809-1|AAR28681.1|  909|Caenorhabditis elegans zinc finger t...    27   6.2  
U40940-3|AAN39667.1|  455|Caenorhabditis elegans Nuclear hormone...    27   8.1  
U40940-2|AAM69090.1|  434|Caenorhabditis elegans Nuclear hormone...    27   8.1  
U40940-1|AAM69089.1|  439|Caenorhabditis elegans Nuclear hormone...    27   8.1  
AF273782-1|AAG15131.1|  439|Caenorhabditis elegans nuclear recep...    27   8.1  
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
           presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 344 LCSI-AVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRP 451
           LCS   V CG     + T+C C +  ST   C + RP
Sbjct: 688 LCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRP 724


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
           protein F07B7.12 protein.
          Length = 1900

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 344 LCSI-AVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRP 451
           LCS   V CG     + T+C C +  ST   C + RP
Sbjct: 688 LCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRP 724


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/56 (28%), Positives = 19/56 (33%)
 Frame = -1

Query: 200 TVEVSRNVLGACGSDDRSGGCYKGCWGXXXXXXXXXXXXXXXHDGAGFG*RQCDGG 33
           T+ VS  +  + G     GGC  GC G                 G G G   C GG
Sbjct: 14  TIHVSSFLFPSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGG 69


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/56 (28%), Positives = 19/56 (33%)
 Frame = -1

Query: 200 TVEVSRNVLGACGSDDRSGGCYKGCWGXXXXXXXXXXXXXXXHDGAGFG*RQCDGG 33
           T+ VS  +  + G     GGC  GC G                 G G G   C GG
Sbjct: 14  TIHVSSFLFPSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGG 69


>U46670-3|AAP46279.1|  312|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 1, isoform d protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430
           SC+GC   + R++ S    I  Y G C ++++  C C   R   C
Sbjct: 89  SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133


>U46670-2|AAC48174.4|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 1, isoform c protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430
           SC+GC   + R++ S    I  Y G C ++++  C C   R   C
Sbjct: 89  SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133


>U46670-1|AAP46277.1|  445|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 1, isoform a protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430
           SC+GC   + R++ S    I  Y G C ++++  C C   R   C
Sbjct: 89  SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133


>AY204166-1|AAO39170.1|  436|Caenorhabditis elegans nuclear receptor
           NHR-1 protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430
           SC+GC   + R++ S    I  Y G C ++++  C C   R   C
Sbjct: 80  SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 124


>AY204165-1|AAO39169.1|  445|Caenorhabditis elegans nuclear receptor
           NHR-1 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430
           SC+GC   + R++ S    I  Y G C ++++  C C   R   C
Sbjct: 89  SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133


>AY204164-1|AAO39168.1|  440|Caenorhabditis elegans nuclear receptor
           NHR-1 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430
           SC+GC   + R++ S    I  Y G C ++++  C C   R   C
Sbjct: 89  SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133


>AY204163-1|AAO39167.1|  440|Caenorhabditis elegans nuclear receptor
           NHR-1 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430
           SC+GC   + R++ S    I  Y G C ++++  C C   R   C
Sbjct: 89  SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133


>Z68108-15|CAJ58502.1|  582|Caenorhabditis elegans Hypothetical
           protein T05A10.1k protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -3

Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
           ++  Q+    R +EQ+ ++   ++Q    Q+  +LH + + ++   Q +QLQ +      
Sbjct: 183 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 237

Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
           L   QL++  ++Q QL ++Q QQ+
Sbjct: 238 LQQQQLQQQQLQQQQLQQQQLQQV 261


>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
           protein T05A10.1a protein.
          Length = 2066

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -3

Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
           ++  Q+    R +EQ+ ++   ++Q    Q+  +LH + + ++   Q +QLQ +      
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214

Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
           L   QL++  ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238


>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
           protein T05A10.1f protein.
          Length = 2048

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -3

Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
           ++  Q+    R +EQ+ ++   ++Q    Q+  +LH + + ++   Q +QLQ +      
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214

Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
           L   QL++  ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238


>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
           protein T05A10.1e protein.
          Length = 2101

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -3

Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
           ++  Q+    R +EQ+ ++   ++Q    Q+  +LH + + ++   Q +QLQ +      
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214

Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
           L   QL++  ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238


>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
           protein T05A10.1d protein.
          Length = 2134

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -3

Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
           ++  Q+    R +EQ+ ++   ++Q    Q+  +LH + + ++   Q +QLQ +      
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214

Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
           L   QL++  ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238


>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
           protein T05A10.1g protein.
          Length = 1888

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -3

Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
           ++  Q+    R +EQ+ ++   ++Q    Q+  +LH + + ++   Q +QLQ +      
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214

Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
           L   QL++  ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238


>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical
           protein T05A10.1i protein.
          Length = 1927

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -3

Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
           ++  Q+    R +EQ+ ++   ++Q    Q+  +LH + + ++   Q +QLQ +      
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214

Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
           L   QL++  ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238


>Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical
           protein T05A10.1j protein.
          Length = 1509

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -3

Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
           ++  Q+    R +EQ+ ++   ++Q    Q+  +LH + + ++   Q +QLQ +      
Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214

Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
           L   QL++  ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238


>Z68108-5|CAD44152.2|  725|Caenorhabditis elegans Hypothetical
           protein T05A10.1b protein.
          Length = 725

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -3

Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
           ++  Q+    R +EQ+ ++   ++Q    Q+  +LH + + ++   Q +QLQ +      
Sbjct: 183 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 237

Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
           L   QL++  ++Q QL ++Q QQ+
Sbjct: 238 LQQQQLQQQQLQQQQLQQQQLQQV 261


>AY390537-1|AAQ94949.1|  692|Caenorhabditis elegans SMA-9 class B
           protein.
          Length = 692

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -3

Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
           ++  Q+    R +EQ+ ++   ++Q    Q+  +LH + + ++   Q +QLQ +      
Sbjct: 183 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 237

Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
           L   QL++  ++Q QL ++Q QQ+
Sbjct: 238 LQQQQLQQQQLQQQQLQQQQLQQV 261


>AY389809-1|AAR28681.1|  909|Caenorhabditis elegans zinc finger
           transcription factorSMA-9 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -3

Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274
           ++  Q+    R +EQ+ ++   ++Q    Q+  +LH + + ++   Q +QLQ +      
Sbjct: 160 QQQAQQQXQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214

Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202
           L   QL++  ++Q QL ++Q QQ+
Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238


>U40940-3|AAN39667.1|  455|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 40, isoform c protein.
          Length = 455

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 433
           SC+GC   + R+L +       + G C + +S  C C   R   CF
Sbjct: 47  SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 92


>U40940-2|AAM69090.1|  434|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 40, isoform b protein.
          Length = 434

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 433
           SC+GC   + R+L +       + G C + +S  C C   R   CF
Sbjct: 31  SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 76


>U40940-1|AAM69089.1|  439|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 40, isoform a protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 433
           SC+GC   + R+L +       + G C + +S  C C   R   CF
Sbjct: 31  SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 76


>AF273782-1|AAG15131.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-40 protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 433
           SC+GC   + R+L +       + G C + +S  C C   R   CF
Sbjct: 31  SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 76


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -3

Query: 429 HRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQL 295
           H ++  ++Q +RVL C++ KP       ++++  R    P +  L
Sbjct: 579 HAMMMAQQQTNRVLICRQCKPPQRLTTARQIKEHRARHLPRKSHL 623


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,371,970
Number of Sequences: 27780
Number of extensions: 138990
Number of successful extensions: 475
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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