BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS307H07f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 29 2.0 AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 29 2.0 Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 4.7 Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 4.7 U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone... 28 4.7 U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone... 28 4.7 U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone... 28 4.7 AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear recep... 28 4.7 AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear recep... 28 4.7 AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear recep... 28 4.7 AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear recep... 28 4.7 Z68108-15|CAJ58502.1| 582|Caenorhabditis elegans Hypothetical p... 27 6.2 Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 27 6.2 Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 27 6.2 Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p... 27 6.2 Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 27 6.2 Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p... 27 6.2 Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr... 27 6.2 Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr... 27 6.2 Z68108-5|CAD44152.2| 725|Caenorhabditis elegans Hypothetical pr... 27 6.2 AY390537-1|AAQ94949.1| 692|Caenorhabditis elegans SMA-9 class B... 27 6.2 AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger t... 27 6.2 U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone... 27 8.1 U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone... 27 8.1 U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone... 27 8.1 AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear recep... 27 8.1 AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 27 8.1 >U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of presynaptic morphologyprotein 1 protein. Length = 3766 Score = 29.1 bits (62), Expect = 2.0 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +2 Query: 344 LCSI-AVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRP 451 LCS V CG + T+C C + ST C + RP Sbjct: 688 LCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRP 724 >AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical protein F07B7.12 protein. Length = 1900 Score = 29.1 bits (62), Expect = 2.0 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +2 Query: 344 LCSI-AVYCGFCSLHRSTLCFCSLHRSTLCFCSIRRP 451 LCS V CG + T+C C + ST C + RP Sbjct: 688 LCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRP 724 >Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein ZK643.8 protein. Length = 774 Score = 27.9 bits (59), Expect = 4.7 Identities = 16/56 (28%), Positives = 19/56 (33%) Frame = -1 Query: 200 TVEVSRNVLGACGSDDRSGGCYKGCWGXXXXXXXXXXXXXXXHDGAGFG*RQCDGG 33 T+ VS + + G GGC GC G G G G C GG Sbjct: 14 TIHVSSFLFPSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGG 69 >Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein ZK643.8 protein. Length = 774 Score = 27.9 bits (59), Expect = 4.7 Identities = 16/56 (28%), Positives = 19/56 (33%) Frame = -1 Query: 200 TVEVSRNVLGACGSDDRSGGCYKGCWGXXXXXXXXXXXXXXXHDGAGFG*RQCDGG 33 T+ VS + + G GGC GC G G G G C GG Sbjct: 14 TIHVSSFLFPSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGG 69 >U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone receptor familyprotein 1, isoform d protein. Length = 312 Score = 27.9 bits (59), Expect = 4.7 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +2 Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430 SC+GC + R++ S I Y G C ++++ C C R C Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133 >U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone receptor familyprotein 1, isoform c protein. Length = 440 Score = 27.9 bits (59), Expect = 4.7 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +2 Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430 SC+GC + R++ S I Y G C ++++ C C R C Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133 >U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone receptor familyprotein 1, isoform a protein. Length = 445 Score = 27.9 bits (59), Expect = 4.7 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +2 Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430 SC+GC + R++ S I Y G C ++++ C C R C Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133 >AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear receptor NHR-1 protein. Length = 436 Score = 27.9 bits (59), Expect = 4.7 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +2 Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430 SC+GC + R++ S I Y G C ++++ C C R C Sbjct: 80 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 124 >AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear receptor NHR-1 protein. Length = 445 Score = 27.9 bits (59), Expect = 4.7 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +2 Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430 SC+GC + R++ S I Y G C ++++ C C R C Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133 >AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear receptor NHR-1 protein. Length = 440 Score = 27.9 bits (59), Expect = 4.7 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +2 Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430 SC+GC + R++ S I Y G C ++++ C C R C Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133 >AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear receptor NHR-1 protein. Length = 440 Score = 27.9 bits (59), Expect = 4.7 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +2 Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLC 430 SC+GC + R++ S I Y G C ++++ C C R C Sbjct: 89 SCNGCKTFFRRTIVSEQTFICQYNGNCDVNKNIRCACRHCRFNKC 133 >Z68108-15|CAJ58502.1| 582|Caenorhabditis elegans Hypothetical protein T05A10.1k protein. Length = 582 Score = 27.5 bits (58), Expect = 6.2 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = -3 Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274 ++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ + Sbjct: 183 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 237 Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202 L QL++ ++Q QL ++Q QQ+ Sbjct: 238 LQQQQLQQQQLQQQQLQQQQLQQV 261 >Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical protein T05A10.1a protein. Length = 2066 Score = 27.5 bits (58), Expect = 6.2 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = -3 Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274 ++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ + Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214 Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202 L QL++ ++Q QL ++Q QQ+ Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238 >Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical protein T05A10.1f protein. Length = 2048 Score = 27.5 bits (58), Expect = 6.2 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = -3 Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274 ++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ + Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214 Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202 L QL++ ++Q QL ++Q QQ+ Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238 >Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical protein T05A10.1e protein. Length = 2101 Score = 27.5 bits (58), Expect = 6.2 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = -3 Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274 ++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ + Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214 Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202 L QL++ ++Q QL ++Q QQ+ Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238 >Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical protein T05A10.1d protein. Length = 2134 Score = 27.5 bits (58), Expect = 6.2 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = -3 Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274 ++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ + Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214 Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202 L QL++ ++Q QL ++Q QQ+ Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238 >Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical protein T05A10.1g protein. Length = 1888 Score = 27.5 bits (58), Expect = 6.2 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = -3 Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274 ++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ + Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214 Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202 L QL++ ++Q QL ++Q QQ+ Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238 >Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical protein T05A10.1i protein. Length = 1927 Score = 27.5 bits (58), Expect = 6.2 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = -3 Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274 ++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ + Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214 Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202 L QL++ ++Q QL ++Q QQ+ Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238 >Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical protein T05A10.1j protein. Length = 1509 Score = 27.5 bits (58), Expect = 6.2 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = -3 Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274 ++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ + Sbjct: 160 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214 Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202 L QL++ ++Q QL ++Q QQ+ Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238 >Z68108-5|CAD44152.2| 725|Caenorhabditis elegans Hypothetical protein T05A10.1b protein. Length = 725 Score = 27.5 bits (58), Expect = 6.2 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = -3 Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274 ++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ + Sbjct: 183 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 237 Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202 L QL++ ++Q QL ++Q QQ+ Sbjct: 238 LQQQQLQQQQLQQQQLQQQQLQQV 261 >AY390537-1|AAQ94949.1| 692|Caenorhabditis elegans SMA-9 class B protein. Length = 692 Score = 27.5 bits (58), Expect = 6.2 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = -3 Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274 ++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ + Sbjct: 183 QQQAQQQAQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 237 Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202 L QL++ ++Q QL ++Q QQ+ Sbjct: 238 LQQQQLQQQQLQQQQLQQQQLQQV 261 >AY389809-1|AAR28681.1| 909|Caenorhabditis elegans zinc finger transcription factorSMA-9 protein. Length = 909 Score = 27.5 bits (58), Expect = 6.2 Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = -3 Query: 447 RRMEQKHRVLRCKEQKHRVLRCKEQ--KPQYTAMLHKELRSERM*EQPEQLQLRTVLPLG 274 ++ Q+ R +EQ+ ++ ++Q Q+ +LH + + ++ Q +QLQ + Sbjct: 160 QQQAQQQXQARQQEQQAQLAAIQQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQ----- 214 Query: 273 LLVWQLERSCMKQGQLPKEQRQQL 202 L QL++ ++Q QL ++Q QQ+ Sbjct: 215 LQQQQLQQQQLQQQQLQQQQLQQV 238 >U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone receptor familyprotein 40, isoform c protein. Length = 455 Score = 27.1 bits (57), Expect = 8.1 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Frame = +2 Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 433 SC+GC + R+L + + G C + +S C C R CF Sbjct: 47 SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 92 >U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone receptor familyprotein 40, isoform b protein. Length = 434 Score = 27.1 bits (57), Expect = 8.1 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Frame = +2 Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 433 SC+GC + R+L + + G C + +S C C R CF Sbjct: 31 SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 76 >U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone receptor familyprotein 40, isoform a protein. Length = 439 Score = 27.1 bits (57), Expect = 8.1 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Frame = +2 Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 433 SC+GC + R+L + + G C + +S C C R CF Sbjct: 31 SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 76 >AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear receptor NHR-40 protein. Length = 439 Score = 27.1 bits (57), Expect = 8.1 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Frame = +2 Query: 302 SCSGCS--YIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTLCF 433 SC+GC + R+L + + G C + +S C C R CF Sbjct: 31 SCNGCKTFFRRALVNKQTFTCQFSGDCVVGKSVRCVCRSCRLKKCF 76 >AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical protein Y48G8AL.10 protein. Length = 976 Score = 27.1 bits (57), Expect = 8.1 Identities = 11/45 (24%), Positives = 23/45 (51%) Frame = -3 Query: 429 HRVLRCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQLQL 295 H ++ ++Q +RVL C++ KP ++++ R P + L Sbjct: 579 HAMMMAQQQTNRVLICRQCKPPQRLTTARQIKEHRARHLPRKSHL 623 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,371,970 Number of Sequences: 27780 Number of extensions: 138990 Number of successful extensions: 475 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 449 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 475 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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