Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H04f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    23   1.2  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    23   1.2  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.9  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.9  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.9  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   3.8  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   5.0  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   5.0  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   5.0  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   6.6  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   6.6  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    21   6.6  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    21   6.6  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    21   6.6  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   6.6  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    21   6.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.7  

>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 284 SNALPVSDPTPTLLSRYDRTF 222
           ++A P  +P P LL RYD  +
Sbjct: 30  TSANPDEEPDPELLDRYDNFY 50


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 284 SNALPVSDPTPTLLSRYDRTF 222
           ++A P  +P P LL RYD  +
Sbjct: 30  TSANPDEEPDPELLDRYDNFY 50


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 414 ESPVGSVRDLRVLEHKL 364
           ES  G V+DLR+  +KL
Sbjct: 69  ESEYGGVKDLRITPNKL 85


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 414 ESPVGSVRDLRVLEHKL 364
           ES  G V+DLR+  +KL
Sbjct: 69  ESEYGGVKDLRITPNKL 85


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 414 ESPVGSVRDLRVLEHKL 364
           ES  G V+DLR+  +KL
Sbjct: 69  ESEYGGVKDLRITPNKL 85


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 414 ESPVGSVRDLRVLEHKL 364
           ES  G V+DLR+  +KL
Sbjct: 69  ESEYGGVKDLRITPNKL 85


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 414 ESPVGSVRDLRVLEHKL 364
           ES  G V+DLR+  +KL
Sbjct: 69  ESEYGGVKDLRITPNKL 85


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 70  CILLASVAIATSYSIKDNEIELPRLRTSDDLLDSVIS 180
           C+ +A       Y+IK + + L  +  SD L ++ ++
Sbjct: 11  CVSVALARPEDQYTIKYDNVNLKEILQSDRLTENYVN 47


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 137 RGYGRVMICWTVLSVIVPKPDRPWHASK*KFYHIWTTKS 253
           +G+G V I     +++V   +RPW        +I  T+S
Sbjct: 51  KGFGGVQISPPNENLVVTSSNRPWWERYQPVSYILNTRS 89


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 137 RGYGRVMICWTVLSVIVPKPDRPWHASK*KFYHIWTTKS 253
           +G+G V I     +++V   +RPW        +I  T+S
Sbjct: 52  KGFGGVQISPPNENLVVTSSNRPWWERYQPVSYILNTRS 90


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 137 RGYGRVMICWTVLSVIVPKPDRPWHASK*KFYHIWTTKS 253
           +G+G V I     +++V   +RPW        +I  T+S
Sbjct: 52  KGFGGVQISPPNENLVVTSSNRPWWERYQPVSYILNTRS 90


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 454 ELHRSRCSQGIQYRIPCRLC 395
           E  R +CS G+ Y    R+C
Sbjct: 118 EASRYQCSPGLAYDREARVC 137


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 454 ELHRSRCSQGIQYRIPCRLC 395
           E  R +CS G+ Y    R+C
Sbjct: 118 EASRYQCSPGLAYDREARVC 137


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 188 PKPDRPWH 211
           PKP  PWH
Sbjct: 60  PKPVEPWH 67


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 188 PKPDRPWH 211
           PKP  PWH
Sbjct: 60  PKPVEPWH 67


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 188 PKPDRPWH 211
           PKP  PWH
Sbjct: 60  PKPVEPWH 67


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 188 PKPDRPWH 211
           PKP  PWH
Sbjct: 60  PKPVEPWH 67


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 188 PKPDRPWH 211
           PKP  PWH
Sbjct: 60  PKPVEPWH 67


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 196 GSPMACLKVKVLSYLDNKVG 255
           GSP+  L  + +  LDN VG
Sbjct: 605 GSPVTSLNREEIKRLDNGVG 624


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,078
Number of Sequences: 336
Number of extensions: 2239
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)