Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307H04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 29 3.0
02_05_0127 - 26053055-26053306,26055415-26055564,26055657-260557... 29 3.0
02_01_0046 - 311752-312138,312220-312372,312458-312653,312702-31... 28 4.0
06_01_0310 - 2240745-2242130 27 6.9
03_01_0063 + 502441-502657,502765-503027,503115-503528 27 6.9
02_01_0513 + 3715406-3715543,3716298-3716708,3716882-3717085,371... 27 6.9
02_01_0461 - 3328662-3329087,3329124-3329201,3329370-3329597,333... 27 6.9
04_03_0799 - 19805190-19805749,19806316-19806403 27 9.1
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 27 9.1
01_05_0578 - 23389066-23389302,23389428-23389571,23389721-23390722 27 9.1
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 334 PKSSPPDHR*LCRCLSRPMPSPFPILHRLCCP 239
P+ PP C+ + P P P+P + CCP
Sbjct: 153 PEKPPPKPE--CKLVPYPYPVPYPYAGQWCCP 182
>02_05_0127 -
26053055-26053306,26055415-26055564,26055657-26055747,
26055835-26055995,26056455-26056579,26056680-26056886,
26056936-26056996
Length = 348
Score = 28.7 bits (61), Expect = 3.0
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = +1
Query: 172 VISDCSEAGSPMACLKVKVLSYLD-NKVGV---GSETGRALDETNIDKVIYD---RVARI 330
V+ A S A L + YLD N V V G+E G L E DKV++ RV RI
Sbjct: 38 VLKPSEFAPSTAAFLAANIPKYLDANAVKVVQGGAEVGEELMEHRWDKVLFTGNARVGRI 97
Query: 331 LDTNEFKFKLP 363
+ T K P
Sbjct: 98 IMTKAAKHLTP 108
>02_01_0046 -
311752-312138,312220-312372,312458-312653,312702-312792,
312808-313228
Length = 415
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 344 NSSLNCRSLCSKTRRSLTEPTGDSIL-NSLRTTRTVKL 454
N SLN ++LC +T R + DSIL N L T + +KL
Sbjct: 25 NLSLNFKTLCPRTSRGNFKCKIDSILRNHLGTAKILKL 62
>06_01_0310 - 2240745-2242130
Length = 461
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 375 EHKLRQFKLEFVGVQNPRHPIIDDFVDVCLVQCPPRFRSY 256
+H ++FK E + + +H + V CLV PRF Y
Sbjct: 141 DHADKEFKSEVSAIASAQHAHLVRLVGFCLVPRGPRFLVY 180
>03_01_0063 + 502441-502657,502765-503027,503115-503528
Length = 297
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 269 VSDPTPTLLSRYDRTFTLR 213
+S P PT++S +DR FT++
Sbjct: 204 ISSPAPTIMSDHDRLFTIQ 222
>02_01_0513 +
3715406-3715543,3716298-3716708,3716882-3717085,
3717552-3717729,3717833-3717951
Length = 349
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 61 KRVCILLASVAIATSYSIKDNEIELPRLRTSDDLLDSVISDCSEAGS 201
+R C + A+VA+ KD+ + L + + D L + S+ +E G+
Sbjct: 28 RRCCPVRAAVAVQAEAQAKDSPLALAQAHETRDKLKAAHSELAEEGA 74
>02_01_0461 -
3328662-3329087,3329124-3329201,3329370-3329597,
3330181-3330204
Length = 251
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 445 RSRCSQGIQYRIPCRLCKRPPRFGT*TPA 359
+SRCS+ ++ CR+C+ + GT T A
Sbjct: 147 KSRCSRTVKDETSCRICQTRGQLGTNTRA 175
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -2
Query: 334 PKSSPPDHR*LCRCLSRPMPSPFPILHRLCCP 239
P+ D + +C+ + P+P P P CCP
Sbjct: 85 PEKKKKDEKPVCKLVPFPVPYPAPPPPPACCP 116
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = +1
Query: 112 IKDNEIELPRLRTSDDLLDSVISDCSEAGSPMACLKVKVLSYLDNKVGVGSETGRALDET 291
+K N++ RLR +++L ++ SEA MA L+ K + + ++ + R +
Sbjct: 1426 VKKNDVLGMRLREKENVLSEMVRSASEAKKKMAHLE-KTIDEKEEEISARVQEKREAIKQ 1484
Query: 292 NIDKVIYDR 318
+ +IY +
Sbjct: 1485 LSNAIIYHK 1493
>01_05_0578 - 23389066-23389302,23389428-23389571,23389721-23390722
Length = 460
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 247 KVGVGSETGRALDETNIDKVIYDRVARILDTNEFKFK 357
+ G G+ TGR ++ V+ D+V+R +D++ F+
Sbjct: 104 QAGAGAVTGRISSRSHHAAVVVDKVSRAIDSHPGPFR 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,328,161
Number of Sequences: 37544
Number of extensions: 294804
Number of successful extensions: 805
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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