Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical...    30   0.87 
Z81506-7|CAB04127.1|  676|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81506-6|CAB04124.1|  368|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U00047-6|AAA50692.1|  279|Caenorhabditis elegans Hypothetical pr...    28   4.7  
CU457740-11|CAM36341.1|  353|Caenorhabditis elegans Hypothetical...    27   6.2  

>AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical
           protein R07C3.4 protein.
          Length = 723

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 268 TGRALDETNIDKVIYDRVARILDTNEFKFKLPEFMFQNAEVSYRADRGFDIEFPE 432
           TG+A  +T +DK I  ++  IL  N  +F +P     N+ + + A   F IE  E
Sbjct: 420 TGKATRDTLVDKYILHKIQMILGPNIKQFLIPAAKTDNSSMRF-ARGAFGIEILE 473


>Z81506-7|CAB04127.1|  676|Caenorhabditis elegans Hypothetical
           protein F16H6.9 protein.
          Length = 676

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
 Frame = -3

Query: 459 ATSFTVLVVLREFNIESPVGSVRDLRVLEHKL-----RQFKLE-FVGVQNPRHPIIDDFV 298
           A  FTVL+ +       P+    D+ +L +       +QF  +  V   + R  +I+ F+
Sbjct: 33  AGHFTVLITVTGLR-SVPIDIAFDVEILGNSALLTNAKQFNCQNAVSQVDQRKSVINIFL 91

Query: 297 DVCLVQCPPRFRSYTDFVVQI**NFHFEACHGRSGFGTITDNTVQQIITRP*PRQFDFVV 118
           D  L+    R R  T     I   + F AC  +       D  VQ+++ RP  R FDF V
Sbjct: 92  DSLLIAI--RSRDATTISAFIDDKYIFVACERKFS----KDEIVQRLVNRPADRTFDFDV 145


>Z81506-6|CAB04124.1|  368|Caenorhabditis elegans Hypothetical
           protein F16H6.8 protein.
          Length = 368

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
 Frame = -3

Query: 459 ATSFTVLVVLREFNIESPVGSVRDLRVLEHKL-----RQFKLE-FVGVQNPRHPIIDDFV 298
           A  FTVL+ +       P+    D+ +L +       +QF  +  V   + R  +I+ F+
Sbjct: 33  AGHFTVLITVTGLR-SVPIDIAFDVEILGNSALLTNAKQFNCQNAVSQVDQRKSVINIFL 91

Query: 297 DVCLVQCPPRFRSYTDFVVQI**NFHFEACHGRSGFGTITDNTVQQIITRP*PRQFDFVV 118
           D  L+    R R  T     I   + F AC  +       D  VQ+++ RP  R FDF V
Sbjct: 92  DSLLIAI--RSRDATTISAFIDDKYIFVACERKFS----KDEIVQRLVNRPADRTFDFDV 145


>U00047-6|AAA50692.1|  279|Caenorhabditis elegans Hypothetical
           protein ZK418.8 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 274 RALDETNIDKVIYDRVARILDTNEFKFKLPEFMFQNAEVSYRADRG 411
           RA DE  + K++  R+A I+D  +  +K  EF  +   V Y   RG
Sbjct: 138 RATDEQCV-KLVRLRIAEIIDNVQKPWKTAEFEVETQMVGYLVGRG 182


>CU457740-11|CAM36341.1|  353|Caenorhabditis elegans Hypothetical
           protein C50E10.11 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = -3

Query: 450 FTVLVVLREFNIES--PVG--SVRDLRVLEHKLRQFKLEFVGV 334
           FT L +LREF+  S  PV   ++ +LRV +  LR F + F+G+
Sbjct: 217 FTNLRILREFDRNSMLPVRFQAMENLRVFDLTLRIFLVGFIGI 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,807,381
Number of Sequences: 27780
Number of extensions: 225748
Number of successful extensions: 702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)