Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31400.1 68417.m04454 expressed protein                             29   1.9  
At5g03160.1 68418.m00264 DNAJ heat shock N-terminal domain-conta...    29   2.5  
At1g69545.1 68414.m07997 leucine-rich repeat family protein cont...    29   2.5  
At1g07280.1 68414.m00774 expressed protein                             28   3.3  
At3g58790.1 68416.m06552 glycosyl transferase family 8 protein c...    27   5.8  
At3g46730.1 68416.m05073 disease resistance protein (CC-NBS clas...    27   5.8  
At1g30160.1 68414.m03687 expressed protein contains Pfam profile...    27   5.8  

>At4g31400.1 68417.m04454 expressed protein
          Length = 322

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 139 RLRTSDDLLDSVISDCSEAGSPMAC 213
           R RTSDD LD+ +  C E   P  C
Sbjct: 260 RCRTSDDRLDNGVIVCEEEAKPAVC 284


>At5g03160.1 68418.m00264 DNAJ heat shock N-terminal
           domain-containing protein similar to P58 protein, Bos
           primigenius taurus, PIR:A56534; similar to p58
           (GI:1353270) {Homo sapiens}; contains Pfam PF00226: DnaJ
           domain; contains Pfam PF00515: TPR Domain
          Length = 482

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 157 DLLDSVISDCSEAGSPMACLKVKVLSYLDNKVGVGSETGRAL--DETNIDKVI 309
           + +D V+   S A S    LKVK+L    +  G  SETG  L  DE N++ ++
Sbjct: 151 EFVDKVVLVFSPACSKAKLLKVKLLMVSKDYSGAISETGYILKEDENNLEALL 203


>At1g69545.1 68414.m07997 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
           similar to disease resistance protein RPP1-WsA
           (GI:3860163)[Arabidopsis thaliana]
          Length = 703

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 130 ELPRLRTSDDLLDSVISDCS 189
           ELP L T+ +LL+ V+SDCS
Sbjct: 11  ELPNLSTAINLLEMVLSDCS 30


>At1g07280.1 68414.m00774 expressed protein
          Length = 552

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +2

Query: 230 YHIWTTKSV*DRKRGGHWTRQTSTKSSMIGWRGFWTPTNSSLNCRSLCSKTRRSLTEPTG 409
           +H W    +         T  +S  SS    R       SSL+CRS+    R + + P G
Sbjct: 11  FHQWVAHPIVHHSSSLSQTLASSAVSSPSRRRIIGNDGRSSLSCRSVMQSQRLNPSSPFG 70

Query: 410 DSILNSLRTTRTVKL 454
            S  N LR +++ +L
Sbjct: 71  TSSTN-LRHSKSCEL 84


>At3g58790.1 68416.m06552 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8; general stress protein gspA, Bacillus
           subtilis, PIR:S16423
          Length = 540

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 172 VISDCSEAGSPMACLKVKVLSYLDNKVGVGSETGRALDETNID 300
           V+   S   SP+ C+ +++    D  + +G E  RAL E   D
Sbjct: 68  VLESASVCDSPLDCMGLRLFRGGDTSLKIGEELTRALVEETTD 110


>At3g46730.1 68416.m05073 disease resistance protein (CC-NBS class),
           putative domain signature CC-NBS exists, suggestive of a
           disease resistance protein.
          Length = 847

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +1

Query: 124 EIELPRLRTSDDLLDSVISDCSEAGSPMACLKVKVLSYLDNKVGVGSETGRALDETNIDK 303
           E  +P L+    L D V+ DC+ +G  +  +  +    L N        G  LDE  I++
Sbjct: 755 ENSMPALQKLPRLEDLVLKDCNYSGVKIMSISAQGFGRLKNLEMSMERRGHGLDELRIEE 814


>At1g30160.1 68414.m03687 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 311

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 269 RGGHWTRQTSTKSSMIGWRGFWTPTNSSLNCRS 367
           R  HW    S +S ++ W   ++P N+S  C+S
Sbjct: 185 REDHWVESPSGESFLVKWFCEYSPENTSNWCKS 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,365,601
Number of Sequences: 28952
Number of extensions: 217319
Number of successful extensions: 542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)